miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19108 5' -55.8 NC_004684.1 + 51654 0.68 0.58
Target:  5'- ----gCUGGCCGugcACGAGGCCcuuGCUGg -3'
miRNA:   3'- gcuaaGGCCGGC---UGUUCCGGuu-CGAC- -5'
19108 5' -55.8 NC_004684.1 + 10091 0.69 0.573557
Target:  5'- cCGGgcagggCUGGCCGGggugcggcucgccguCAcAGGCCGAGCUGu -3'
miRNA:   3'- -GCUaa----GGCCGGCU---------------GU-UCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 301 0.7 0.516523
Target:  5'- aGAguucgCUGGCCGcCGAGGCCAAcGCc- -3'
miRNA:   3'- gCUaa---GGCCGGCuGUUCCGGUU-CGac -5'
19108 5' -55.8 NC_004684.1 + 18088 0.7 0.465846
Target:  5'- uCGAUcCUGGaCGGCAAGGCCAccgAGCg- -3'
miRNA:   3'- -GCUAaGGCCgGCUGUUCCGGU---UCGac -5'
19108 5' -55.8 NC_004684.1 + 16527 0.66 0.720026
Target:  5'- cCGAUg-UGGCCGcCGAGGUUGAGCa- -3'
miRNA:   3'- -GCUAagGCCGGCuGUUCCGGUUCGac -5'
19108 5' -55.8 NC_004684.1 + 44950 0.67 0.6774
Target:  5'- gGAUcgccgCCGcGCCGACGgcgauggcguugAGGCCcagcGGGCUGg -3'
miRNA:   3'- gCUAa----GGC-CGGCUGU------------UCCGG----UUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 8437 0.69 0.537417
Target:  5'- ----cUCGGCgGACAGGGCCcGGCg- -3'
miRNA:   3'- gcuaaGGCCGgCUGUUCCGGuUCGac -5'
19108 5' -55.8 NC_004684.1 + 478 0.71 0.456019
Target:  5'- aGGUUgUGGCCGcCAAGGCCGcGCc- -3'
miRNA:   3'- gCUAAgGCCGGCuGUUCCGGUuCGac -5'
19108 5' -55.8 NC_004684.1 + 8955 0.67 0.6774
Target:  5'- uCGggUCCGGC--ACGGGGCCGgaGGCa- -3'
miRNA:   3'- -GCuaAGGCCGgcUGUUCCGGU--UCGac -5'
19108 5' -55.8 NC_004684.1 + 45469 0.71 0.436705
Target:  5'- uGAUgcucCCGGCgGugGucaccGGGCCAGGCUa -3'
miRNA:   3'- gCUAa---GGCCGgCugU-----UCCGGUUCGAc -5'
19108 5' -55.8 NC_004684.1 + 7959 0.69 0.547973
Target:  5'- ----aCCGGUgGGCAAGGCCGccaGGCg- -3'
miRNA:   3'- gcuaaGGCCGgCUGUUCCGGU---UCGac -5'
19108 5' -55.8 NC_004684.1 + 17344 0.68 0.612402
Target:  5'- cCGGUUCCuGGCCuggagccaGGCAccGGCCAcGCUGc -3'
miRNA:   3'- -GCUAAGG-CCGG--------CUGUu-CCGGUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 1421 0.69 0.537417
Target:  5'- gGAggCCuGCCGGgcCAagguccAGGCCGAGCUGg -3'
miRNA:   3'- gCUaaGGcCGGCU--GU------UCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 41085 0.69 0.526931
Target:  5'- ----cCCGG-CGGCcuGGCCGAGCUGc -3'
miRNA:   3'- gcuaaGGCCgGCUGuuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 32225 0.7 0.506199
Target:  5'- cCGGUUCCGGCuCGGCca--CCGAGUUGg -3'
miRNA:   3'- -GCUAAGGCCG-GCUGuuccGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 19138 0.7 0.485824
Target:  5'- aCGAcaaCGGacgccuccCCGGCAAGGCCAucgAGCUGg -3'
miRNA:   3'- -GCUaagGCC--------GGCUGUUCCGGU---UCGAC- -5'
19108 5' -55.8 NC_004684.1 + 41579 0.66 0.740874
Target:  5'- -cGUUCUGGCCGcCAcccGGCCA-GUUGg -3'
miRNA:   3'- gcUAAGGCCGGCuGUu--CCGGUuCGAC- -5'
19108 5' -55.8 NC_004684.1 + 61432 0.66 0.739842
Target:  5'- ----gCCGGucgcucaCCGGCGcGGCCAGGUUGg -3'
miRNA:   3'- gcuaaGGCC-------GGCUGUuCCGGUUCGAC- -5'
19108 5' -55.8 NC_004684.1 + 52317 0.67 0.698839
Target:  5'- ----aCCGcGCCGAUAAGGCCGucgaccucauccGGCg- -3'
miRNA:   3'- gcuaaGGC-CGGCUGUUCCGGU------------UCGac -5'
19108 5' -55.8 NC_004684.1 + 12003 0.67 0.688145
Target:  5'- gCGAagguUUCCGGCgCGAUccGGGCCA-GCUu -3'
miRNA:   3'- -GCU----AAGGCCG-GCUGu-UCCGGUuCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.