Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 43720 | 0.67 | 0.688145 |
Target: 5'- ---gUCCGGgCCGACcAGGCCGucGGUg- -3' miRNA: 3'- gcuaAGGCC-GGCUGuUCCGGU--UCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 20316 | 0.66 | 0.751144 |
Target: 5'- -cGUUCUGGUgcccUGGCAauGGGCCGGGCa- -3' miRNA: 3'- gcUAAGGCCG----GCUGU--UCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 24392 | 0.69 | 0.526932 |
Target: 5'- aGAUUCaggugaaGGCCGACAccaagaAGGcCCAGGCc- -3' miRNA: 3'- gCUAAGg------CCGGCUGU------UCC-GGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 32649 | 0.75 | 0.26573 |
Target: 5'- aGAUcgugCCGGuuGGCAAGGCCuGGCg- -3' miRNA: 3'- gCUAa---GGCCggCUGUUCCGGuUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 36482 | 0.66 | 0.740875 |
Target: 5'- gCGGcaCCGGguucgacaUCGGCAAGGCCGGgacGCUGa -3' miRNA: 3'- -GCUaaGGCC--------GGCUGUUCCGGUU---CGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 9906 | 0.71 | 0.443412 |
Target: 5'- aCGAguggUCCgGGCUGACcgaggcggugauuguGGCCGGGCUGa -3' miRNA: 3'- -GCUa---AGG-CCGGCUGuu-------------CCGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 16352 | 0.71 | 0.446304 |
Target: 5'- uGGcgCUGGCCGACAAgcuggcGGCCGAGUa- -3' miRNA: 3'- gCUaaGGCCGGCUGUU------CCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 44547 | 0.69 | 0.537417 |
Target: 5'- aCGAacCCGGUCGGCAggccggugaucGGGUCAGGCa- -3' miRNA: 3'- -GCUaaGGCCGGCUGU-----------UCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 43951 | 0.69 | 0.558594 |
Target: 5'- aGG-UCUcGCCGuCGAGGCCGAGCa- -3' miRNA: 3'- gCUaAGGcCGGCuGUUCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 23833 | 0.66 | 0.70947 |
Target: 5'- gGAg--CGGCUgGACAAGGCCAAGg-- -3' miRNA: 3'- gCUaagGCCGG-CUGUUCCGGUUCgac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 19682 | 0.66 | 0.70947 |
Target: 5'- ----aCCGGCgcggCGGCAAGGCCuGGCc- -3' miRNA: 3'- gcuaaGGCCG----GCUGUUCCGGuUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 15501 | 0.66 | 0.70841 |
Target: 5'- -aGUUCCuggacaaGGCCGccCGGGGCCGGGCg- -3' miRNA: 3'- gcUAAGG-------CCGGCu-GUUCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 4359 | 0.67 | 0.698839 |
Target: 5'- aGGUcUCCGa-CGACuucucgaccccgGAGGCCGAGCUGg -3' miRNA: 3'- gCUA-AGGCcgGCUG------------UUCCGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 16037 | 0.67 | 0.688146 |
Target: 5'- aCGugcCCGGCgacgaCGACAucguGGCCAAGCa- -3' miRNA: 3'- -GCuaaGGCCG-----GCUGUu---CCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 65347 | 0.67 | 0.6774 |
Target: 5'- aCGAUggCGGCCccCAGGGCCAccagGGCg- -3' miRNA: 3'- -GCUAagGCCGGcuGUUCCGGU----UCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 62886 | 0.67 | 0.687073 |
Target: 5'- gGAUcCCGGCCaugccguugccacGGC-GGGCCAGGCc- -3' miRNA: 3'- gCUAaGGCCGG-------------CUGuUCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 38304 | 0.67 | 0.6774 |
Target: 5'- uGGUcaaCgGGUCGAucacCGAGGCCAAGCUc -3' miRNA: 3'- gCUAa--GgCCGGCU----GUUCCGGUUCGAc -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 41646 | 0.67 | 0.666613 |
Target: 5'- aGAUcgccUCCGGUgCGGCGuacgaAGGCCGGGCc- -3' miRNA: 3'- gCUA----AGGCCG-GCUGU-----UCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 23103 | 0.68 | 0.612402 |
Target: 5'- cCGAgcagUCCGG-CGAUcuGGCCAAGUg- -3' miRNA: 3'- -GCUa---AGGCCgGCUGuuCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 23031 | 0.68 | 0.611319 |
Target: 5'- gCGAuUUCCuGCCacgccuuggugacGGCcuGGCCAAGCUGg -3' miRNA: 3'- -GCU-AAGGcCGG-------------CUGuuCCGGUUCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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