Results 61 - 75 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19108 | 5' | -55.8 | NC_004684.1 | + | 12122 | 0.66 | 0.740875 |
Target: 5'- cCGAccCCGGCUGAgGAGaucaGCCGAcuGCUGg -3' miRNA: 3'- -GCUaaGGCCGGCUgUUC----CGGUU--CGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 36482 | 0.66 | 0.740875 |
Target: 5'- gCGGcaCCGGguucgacaUCGGCAAGGCCGGgacGCUGa -3' miRNA: 3'- -GCUaaGGCC--------GGCUGUUCCGGUU---CGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 5968 | 0.66 | 0.730499 |
Target: 5'- cCGGUgagcgaCCGGCCGAgCAAgucccGGCCuGGCUc -3' miRNA: 3'- -GCUAa-----GGCCGGCU-GUU-----CCGGuUCGAc -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 19682 | 0.66 | 0.70947 |
Target: 5'- ----aCCGGCgcggCGGCAAGGCCuGGCc- -3' miRNA: 3'- gcuaaGGCCG----GCUGUUCCGGuUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 23833 | 0.66 | 0.70947 |
Target: 5'- gGAg--CGGCUgGACAAGGCCAAGg-- -3' miRNA: 3'- gCUaagGCCGG-CUGUUCCGGUUCgac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 15501 | 0.66 | 0.70841 |
Target: 5'- -aGUUCCuggacaaGGCCGccCGGGGCCGGGCg- -3' miRNA: 3'- gcUAAGG-------CCGGCu-GUUCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 4359 | 0.67 | 0.698839 |
Target: 5'- aGGUcUCCGa-CGACuucucgaccccgGAGGCCGAGCUGg -3' miRNA: 3'- gCUA-AGGCcgGCUG------------UUCCGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 16037 | 0.67 | 0.688146 |
Target: 5'- aCGugcCCGGCgacgaCGACAucguGGCCAAGCa- -3' miRNA: 3'- -GCuaaGGCCG-----GCUGUu---CCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 62886 | 0.67 | 0.687073 |
Target: 5'- gGAUcCCGGCCaugccguugccacGGC-GGGCCAGGCc- -3' miRNA: 3'- gCUAaGGCCGG-------------CUGuUCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 65347 | 0.67 | 0.6774 |
Target: 5'- aCGAUggCGGCCccCAGGGCCAccagGGCg- -3' miRNA: 3'- -GCUAagGCCGGcuGUUCCGGU----UCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 38304 | 0.67 | 0.6774 |
Target: 5'- uGGUcaaCgGGUCGAucacCGAGGCCAAGCUc -3' miRNA: 3'- gCUAa--GgCCGGCU----GUUCCGGUUCGAc -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 41646 | 0.67 | 0.666613 |
Target: 5'- aGAUcgccUCCGGUgCGGCGuacgaAGGCCGGGCc- -3' miRNA: 3'- gCUA----AGGCCG-GCUGU-----UCCGGUUCGac -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 6619 | 0.67 | 0.666613 |
Target: 5'- cCGGaaCCGGCCuGGcCAGGGCCGuGCUc -3' miRNA: 3'- -GCUaaGGCCGG-CU-GUUCCGGUuCGAc -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 25950 | 0.67 | 0.655793 |
Target: 5'- aGGUgCCcaacGCCGAgcuGGCCAAGCUGg -3' miRNA: 3'- gCUAaGGc---CGGCUguuCCGGUUCGAC- -5' |
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19108 | 5' | -55.8 | NC_004684.1 | + | 64729 | 0.76 | 0.215899 |
Target: 5'- uCGggUCCaucuuguGGCCGACcugcuGGCCGAGCUGg -3' miRNA: 3'- -GCuaAGG-------CCGGCUGuu---CCGGUUCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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