miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 3' -55.2 NC_004684.1 + 63918 0.66 0.77782
Target:  5'- uGCGGcCcGGCGuGGCUGAgcuugGGCGa- -3'
miRNA:   3'- gCGCUuGuCCGCuUCGACUa----CCGCag -5'
19109 3' -55.2 NC_004684.1 + 48956 0.66 0.77782
Target:  5'- aCGUcGGCGGGCGggGUggccgGGgcggGcGCGUCg -3'
miRNA:   3'- -GCGcUUGUCCGCuuCGa----CUa---C-CGCAG- -5'
19109 3' -55.2 NC_004684.1 + 45843 0.66 0.77782
Target:  5'- gGCGGuCAugccGCGcucGUUGAUGGCGUCg -3'
miRNA:   3'- gCGCUuGUc---CGCuu-CGACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 44673 0.66 0.77782
Target:  5'- uGCG-GCGGcGCGAuGCcGAugucgcUGGCGUCg -3'
miRNA:   3'- gCGCuUGUC-CGCUuCGaCU------ACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 57193 0.66 0.76783
Target:  5'- gGCGGGCcuggaAGGCGGcGGCgcGAUGGUGcUCa -3'
miRNA:   3'- gCGCUUG-----UCCGCU-UCGa-CUACCGC-AG- -5'
19109 3' -55.2 NC_004684.1 + 30567 0.66 0.757703
Target:  5'- -uCGAccucGguGGUGGAGCUGGUcugGGUGUCg -3'
miRNA:   3'- gcGCU----UguCCGCUUCGACUA---CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 6847 0.66 0.747449
Target:  5'- gCGCGAA-GGGCGAcGCcgUGGUGGUGc- -3'
miRNA:   3'- -GCGCUUgUCCGCUuCG--ACUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 21216 0.66 0.747449
Target:  5'- aCGC--GCAGGCGcuucacuuCUGGUGGCGUg -3'
miRNA:   3'- -GCGcuUGUCCGCuuc-----GACUACCGCAg -5'
19109 3' -55.2 NC_004684.1 + 3903 0.66 0.747449
Target:  5'- gGC--GCAGGCGcAGCUGGaGGCcUCg -3'
miRNA:   3'- gCGcuUGUCCGCuUCGACUaCCGcAG- -5'
19109 3' -55.2 NC_004684.1 + 22243 0.66 0.745384
Target:  5'- gCGCGAucaacgcGCAGGCGcGAGCaUGGgaccgccUGGCGg- -3'
miRNA:   3'- -GCGCU-------UGUCCGC-UUCG-ACU-------ACCGCag -5'
19109 3' -55.2 NC_004684.1 + 30164 0.66 0.73708
Target:  5'- aGUGGGCGaucaacgccgucGGCGGcgAGCUGGUGGCc-- -3'
miRNA:   3'- gCGCUUGU------------CCGCU--UCGACUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 40734 0.66 0.73708
Target:  5'- gCGCGGcGgGGGCGGuGGC-GGUGGUGUUg -3'
miRNA:   3'- -GCGCU-UgUCCGCU-UCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 51690 0.66 0.73708
Target:  5'- cCGgGAGCA--CGAuGCcGGUGGCGUCg -3'
miRNA:   3'- -GCgCUUGUccGCUuCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 30624 0.67 0.726608
Target:  5'- aGCGucggcacCGGGCGcGGCccUGgcGGCGUCa -3'
miRNA:   3'- gCGCuu-----GUCCGCuUCG--ACuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 53593 0.67 0.726608
Target:  5'- gGCGuuGCGGGCGAcaccgcGCUGGaGGCG-Ca -3'
miRNA:   3'- gCGCu-UGUCCGCUu-----CGACUaCCGCaG- -5'
19109 3' -55.2 NC_004684.1 + 64744 0.67 0.726608
Target:  5'- gGcCGAccuGCuGGCcGAGCUGGUgccaGGCGUCg -3'
miRNA:   3'- gC-GCU---UGuCCGcUUCGACUA----CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 65021 0.67 0.726608
Target:  5'- uGUGGccAUAGGCGAccucguGGCUGA-GGuCGUCc -3'
miRNA:   3'- gCGCU--UGUCCGCU------UCGACUaCC-GCAG- -5'
19109 3' -55.2 NC_004684.1 + 53457 0.67 0.720279
Target:  5'- cCGCGAgugucagcaccggcaACGGGUGGuuGGCcaGGUaGGCGUCg -3'
miRNA:   3'- -GCGCU---------------UGUCCGCU--UCGa-CUA-CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 18453 0.67 0.716043
Target:  5'- -cCGAGCAGGaCGAcggcaccgAGCUGGUGcUGUCg -3'
miRNA:   3'- gcGCUUGUCC-GCU--------UCGACUACcGCAG- -5'
19109 3' -55.2 NC_004684.1 + 46876 0.67 0.713919
Target:  5'- gGCGAugacgccgccuuCGGGaccauacGGCUGAUGGUGUCg -3'
miRNA:   3'- gCGCUu-----------GUCCgcu----UCGACUACCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.