miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 3' -55.2 NC_004684.1 + 5214 0.67 0.705396
Target:  5'- cCGUGcucCAGGUGAGGCc-AUGGUGUCc -3'
miRNA:   3'- -GCGCuu-GUCCGCUUCGacUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 62806 0.67 0.705396
Target:  5'- uGcCGGGCAGGCGGgggagcuuucaGGCcGAccgGGUGUCg -3'
miRNA:   3'- gC-GCUUGUCCGCU-----------UCGaCUa--CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 65578 0.67 0.708598
Target:  5'- uGCGAGCAggccgaugacaccGGCGAccucgcccuucucgcAGCUGuUGGCG-Cg -3'
miRNA:   3'- gCGCUUGU-------------CCGCU---------------UCGACuACCGCaG- -5'
19109 3' -55.2 NC_004684.1 + 30322 0.67 0.698973
Target:  5'- cCGCGAacagGCAGGCGAucugcugcgccagcaGGUUGuUGGUGa- -3'
miRNA:   3'- -GCGCU----UGUCCGCU---------------UCGACuACCGCag -5'
19109 3' -55.2 NC_004684.1 + 14682 0.67 0.705396
Target:  5'- -aCGAGCGuGGCGAGGCcGAcgGGCG-Cg -3'
miRNA:   3'- gcGCUUGU-CCGCUUCGaCUa-CCGCaG- -5'
19109 3' -55.2 NC_004684.1 + 65021 0.67 0.726608
Target:  5'- uGUGGccAUAGGCGAccucguGGCUGA-GGuCGUCc -3'
miRNA:   3'- gCGCU--UGUCCGCU------UCGACUaCC-GCAG- -5'
19109 3' -55.2 NC_004684.1 + 60954 0.67 0.683902
Target:  5'- uGCGugcuguACAccuCGuGGCUGGUGGCGUCg -3'
miRNA:   3'- gCGCu-----UGUcc-GCuUCGACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 27966 0.67 0.705396
Target:  5'- uCGcCGAACAGcccgagaguGCGGAGUUcGgcGGCGUCu -3'
miRNA:   3'- -GC-GCUUGUC---------CGCUUCGA-CuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 66371 0.68 0.629498
Target:  5'- aCGCGggUguuggGGGUGAAGUccgGcAUGGUGUCc -3'
miRNA:   3'- -GCGCuuG-----UCCGCUUCGa--C-UACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 59299 0.68 0.628407
Target:  5'- gGUGGGCAGGCcggugucGggGUcGAUGGCGc- -3'
miRNA:   3'- gCGCUUGUCCG-------CuuCGaCUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 35413 0.68 0.640414
Target:  5'- uGCGggUAGaucagcGCGGAGgUGGugaucggcUGGCGUCg -3'
miRNA:   3'- gCGCuuGUC------CGCUUCgACU--------ACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 57033 0.68 0.662213
Target:  5'- gCGCGAucucgcGCAuguccuccccGGCGggGUcGAUGGCGg- -3'
miRNA:   3'- -GCGCU------UGU----------CCGCuuCGaCUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 25231 0.68 0.618585
Target:  5'- uGCGGcgcucucgacccAUAGGCcguGCgUGGUGGCGUCg -3'
miRNA:   3'- gCGCU------------UGUCCGcuuCG-ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 51135 0.69 0.607683
Target:  5'- gCGCGAACaccGGGCG-AGCgacguaauggGAUgcGGCGUCc -3'
miRNA:   3'- -GCGCUUG---UCCGCuUCGa---------CUA--CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 63950 0.69 0.56437
Target:  5'- gGCGAACAccguGGUGccGCUGAcugUGGCGg- -3'
miRNA:   3'- gCGCUUGU----CCGCuuCGACU---ACCGCag -5'
19109 3' -55.2 NC_004684.1 + 66119 0.69 0.553657
Target:  5'- aCGCGuGCuGGCGAAGUggucGccGGUGUCg -3'
miRNA:   3'- -GCGCuUGuCCGCUUCGa---CuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 21303 0.69 0.596802
Target:  5'- uGCGcaacGCAGGCGAGGC-GGUGGUc-- -3'
miRNA:   3'- gCGCu---UGUCCGCUUCGaCUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 45920 0.69 0.607683
Target:  5'- gCGCucGCGGGCaugcAGUUcGAUGGCGUCc -3'
miRNA:   3'- -GCGcuUGUCCGcu--UCGA-CUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 46340 0.69 0.607683
Target:  5'- gGCGAACAcGaugGGAGCgUGGUGGuCGUCg -3'
miRNA:   3'- gCGCUUGUcCg--CUUCG-ACUACC-GCAG- -5'
19109 3' -55.2 NC_004684.1 + 44125 0.69 0.553657
Target:  5'- uCGCuGGACAGGaacucgugcaGuuGCgUGGUGGCGUCg -3'
miRNA:   3'- -GCG-CUUGUCCg---------CuuCG-ACUACCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.