Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19109 | 3' | -55.2 | NC_004684.1 | + | 31548 | 0.7 | 0.510446 |
Target: 5'- gGCcuGCGGGgagaugccuacguCGAAGCUGgcGGCGUCg -3' miRNA: 3'- gCGcuUGUCC-------------GCUUCGACuaCCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 1796 | 0.7 | 0.543004 |
Target: 5'- uGCGAgaaGGGCGAGGUcGccGGUGUCa -3' miRNA: 3'- gCGCUug-UCCGCUUCGaCuaCCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 60189 | 0.7 | 0.53242 |
Target: 5'- aCGCGGccugGCAGGauguGCUGAUcGGCGUUg -3' miRNA: 3'- -GCGCU----UGUCCgcuuCGACUA-CCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 25959 | 0.7 | 0.53242 |
Target: 5'- aCGcCGAGCuGGCcAAGCUGGUGcGCGa- -3' miRNA: 3'- -GC-GCUUGuCCGcUUCGACUAC-CGCag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 44941 | 0.7 | 0.500115 |
Target: 5'- gCGCGGGCGGGaucgccgccgcgcCGAcGGC-GAUGGCGUUg -3' miRNA: 3'- -GCGCUUGUCC-------------GCU-UCGaCUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 47477 | 0.7 | 0.501144 |
Target: 5'- gGUGuauccCAGGUccaGGAGCuUGGUGGCGUCg -3' miRNA: 3'- gCGCuu---GUCCG---CUUCG-ACUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 58534 | 0.71 | 0.494984 |
Target: 5'- gGCGcuCAGGCGAcacguccaggcccauGGCcagucgggcGAUGGCGUCg -3' miRNA: 3'- gCGCuuGUCCGCU---------------UCGa--------CUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 42190 | 0.72 | 0.403619 |
Target: 5'- gGUGAGCAGugggccGUGGAGCUGGUGGCc-- -3' miRNA: 3'- gCGCUUGUC------CGCUUCGACUACCGcag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 58123 | 0.72 | 0.422173 |
Target: 5'- cCGCGAACAacGCGAccGGCUGAucgacaUGGCGaUCa -3' miRNA: 3'- -GCGCUUGUc-CGCU--UCGACU------ACCGC-AG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 62780 | 0.72 | 0.403619 |
Target: 5'- gGCGGGCAGGUGAugAGCaGGUuucGCGUCa -3' miRNA: 3'- gCGCUUGUCCGCU--UCGaCUAc--CGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 51914 | 0.73 | 0.376778 |
Target: 5'- gGCGAACGGGU--GGCUGGUGGUc-- -3' miRNA: 3'- gCGCUUGUCCGcuUCGACUACCGcag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 11276 | 0.73 | 0.368101 |
Target: 5'- gGUGAugAGcGCGGAGCUGAUcGGCa-- -3' miRNA: 3'- gCGCUugUC-CGCUUCGACUA-CCGcag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 11357 | 0.73 | 0.342907 |
Target: 5'- gCGCGAGaCccGCGAGGUgccggUGGUGGCGUCc -3' miRNA: 3'- -GCGCUU-GucCGCUUCG-----ACUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 36860 | 0.74 | 0.296327 |
Target: 5'- aCGUGGAagaAGGCGAcauGCUGGUGGCcgugGUCg -3' miRNA: 3'- -GCGCUUg--UCCGCUu--CGACUACCG----CAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 47859 | 0.75 | 0.281932 |
Target: 5'- gCGCGAACcggAGGCGguGCcGGUGaGCGUCu -3' miRNA: 3'- -GCGCUUG---UCCGCuuCGaCUAC-CGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 61350 | 0.75 | 0.274945 |
Target: 5'- gGCGGcCAGGUGAAuGgUGGUGGCGUUc -3' miRNA: 3'- gCGCUuGUCCGCUU-CgACUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 48040 | 0.76 | 0.235912 |
Target: 5'- gCGCGAuCAGGCGgcGCaugcgGAUGGCGg- -3' miRNA: 3'- -GCGCUuGUCCGCuuCGa----CUACCGCag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 3771 | 1.09 | 0.00125 |
Target: 5'- cCGCGAACAGGCGAAGCUGAUGGCGUCc -3' miRNA: 3'- -GCGCUUGUCCGCUUCGACUACCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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