Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19109 | 3' | -55.2 | NC_004684.1 | + | 21303 | 0.69 | 0.596802 |
Target: 5'- uGCGcaacGCAGGCGAGGC-GGUGGUc-- -3' miRNA: 3'- gCGCu---UGUCCGCUUCGaCUACCGcag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 44125 | 0.69 | 0.553657 |
Target: 5'- uCGCuGGACAGGaacucgugcaGuuGCgUGGUGGCGUCg -3' miRNA: 3'- -GCG-CUUGUCCg---------CuuCG-ACUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 45920 | 0.69 | 0.607683 |
Target: 5'- gCGCucGCGGGCaugcAGUUcGAUGGCGUCc -3' miRNA: 3'- -GCGcuUGUCCGcu--UCGA-CUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 66119 | 0.69 | 0.553657 |
Target: 5'- aCGCGuGCuGGCGAAGUggucGccGGUGUCg -3' miRNA: 3'- -GCGCuUGuCCGCUUCGa---CuaCCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 63950 | 0.69 | 0.56437 |
Target: 5'- gGCGAACAccguGGUGccGCUGAcugUGGCGg- -3' miRNA: 3'- gCGCUUGU----CCGCuuCGACU---ACCGCag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 25231 | 0.68 | 0.618585 |
Target: 5'- uGCGGcgcucucgacccAUAGGCcguGCgUGGUGGCGUCg -3' miRNA: 3'- gCGCU------------UGUCCGcuuCG-ACUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 59299 | 0.68 | 0.628407 |
Target: 5'- gGUGGGCAGGCcggugucGggGUcGAUGGCGc- -3' miRNA: 3'- gCGCUUGUCCG-------CuuCGaCUACCGCag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 57033 | 0.68 | 0.662213 |
Target: 5'- gCGCGAucucgcGCAuguccuccccGGCGggGUcGAUGGCGg- -3' miRNA: 3'- -GCGCU------UGU----------CCGCuuCGaCUACCGCag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 35413 | 0.68 | 0.640414 |
Target: 5'- uGCGggUAGaucagcGCGGAGgUGGugaucggcUGGCGUCg -3' miRNA: 3'- gCGCuuGUC------CGCUUCgACU--------ACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 66371 | 0.68 | 0.629498 |
Target: 5'- aCGCGggUguuggGGGUGAAGUccgGcAUGGUGUCc -3' miRNA: 3'- -GCGCuuG-----UCCGCUUCGa--C-UACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 60954 | 0.67 | 0.683902 |
Target: 5'- uGCGugcuguACAccuCGuGGCUGGUGGCGUCg -3' miRNA: 3'- gCGCu-----UGUcc-GCuUCGACUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 27966 | 0.67 | 0.705396 |
Target: 5'- uCGcCGAACAGcccgagaguGCGGAGUUcGgcGGCGUCu -3' miRNA: 3'- -GC-GCUUGUC---------CGCUUCGA-CuaCCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 62806 | 0.67 | 0.705396 |
Target: 5'- uGcCGGGCAGGCGGgggagcuuucaGGCcGAccgGGUGUCg -3' miRNA: 3'- gC-GCUUGUCCGCU-----------UCGaCUa--CCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 5214 | 0.67 | 0.705396 |
Target: 5'- cCGUGcucCAGGUGAGGCc-AUGGUGUCc -3' miRNA: 3'- -GCGCuu-GUCCGCUUCGacUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 17992 | 0.67 | 0.705396 |
Target: 5'- cCGUGAcaAGGCuGAGGUcGAUGGCGa- -3' miRNA: 3'- -GCGCUugUCCG-CUUCGaCUACCGCag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 18453 | 0.67 | 0.716043 |
Target: 5'- -cCGAGCAGGaCGAcggcaccgAGCUGGUGcUGUCg -3' miRNA: 3'- gcGCUUGUCC-GCU--------UCGACUACcGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 53457 | 0.67 | 0.720279 |
Target: 5'- cCGCGAgugucagcaccggcaACGGGUGGuuGGCcaGGUaGGCGUCg -3' miRNA: 3'- -GCGCU---------------UGUCCGCU--UCGa-CUA-CCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 64744 | 0.67 | 0.726608 |
Target: 5'- gGcCGAccuGCuGGCcGAGCUGGUgccaGGCGUCg -3' miRNA: 3'- gC-GCU---UGuCCGcUUCGACUA----CCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 65021 | 0.67 | 0.726608 |
Target: 5'- uGUGGccAUAGGCGAccucguGGCUGA-GGuCGUCc -3' miRNA: 3'- gCGCU--UGUCCGCU------UCGACUaCC-GCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 30322 | 0.67 | 0.698973 |
Target: 5'- cCGCGAacagGCAGGCGAucugcugcgccagcaGGUUGuUGGUGa- -3' miRNA: 3'- -GCGCU----UGUCCGCU---------------UCGACuACCGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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