miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 3' -55.2 NC_004684.1 + 3771 1.09 0.00125
Target:  5'- cCGCGAACAGGCGAAGCUGAUGGCGUCc -3'
miRNA:   3'- -GCGCUUGUCCGCUUCGACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 48040 0.76 0.235912
Target:  5'- gCGCGAuCAGGCGgcGCaugcgGAUGGCGg- -3'
miRNA:   3'- -GCGCUuGUCCGCuuCGa----CUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 61350 0.75 0.274945
Target:  5'- gGCGGcCAGGUGAAuGgUGGUGGCGUUc -3'
miRNA:   3'- gCGCUuGUCCGCUU-CgACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 47859 0.75 0.281932
Target:  5'- gCGCGAACcggAGGCGguGCcGGUGaGCGUCu -3'
miRNA:   3'- -GCGCUUG---UCCGCuuCGaCUAC-CGCAG- -5'
19109 3' -55.2 NC_004684.1 + 36860 0.74 0.296327
Target:  5'- aCGUGGAagaAGGCGAcauGCUGGUGGCcgugGUCg -3'
miRNA:   3'- -GCGCUUg--UCCGCUu--CGACUACCG----CAG- -5'
19109 3' -55.2 NC_004684.1 + 11357 0.73 0.342907
Target:  5'- gCGCGAGaCccGCGAGGUgccggUGGUGGCGUCc -3'
miRNA:   3'- -GCGCUU-GucCGCUUCG-----ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 11276 0.73 0.368101
Target:  5'- gGUGAugAGcGCGGAGCUGAUcGGCa-- -3'
miRNA:   3'- gCGCUugUC-CGCUUCGACUA-CCGcag -5'
19109 3' -55.2 NC_004684.1 + 51914 0.73 0.376778
Target:  5'- gGCGAACGGGU--GGCUGGUGGUc-- -3'
miRNA:   3'- gCGCUUGUCCGcuUCGACUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 42190 0.72 0.403619
Target:  5'- gGUGAGCAGugggccGUGGAGCUGGUGGCc-- -3'
miRNA:   3'- gCGCUUGUC------CGCUUCGACUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 62780 0.72 0.403619
Target:  5'- gGCGGGCAGGUGAugAGCaGGUuucGCGUCa -3'
miRNA:   3'- gCGCUUGUCCGCU--UCGaCUAc--CGCAG- -5'
19109 3' -55.2 NC_004684.1 + 58123 0.72 0.422173
Target:  5'- cCGCGAACAacGCGAccGGCUGAucgacaUGGCGaUCa -3'
miRNA:   3'- -GCGCUUGUc-CGCU--UCGACU------ACCGC-AG- -5'
19109 3' -55.2 NC_004684.1 + 58534 0.71 0.494984
Target:  5'- gGCGcuCAGGCGAcacguccaggcccauGGCcagucgggcGAUGGCGUCg -3'
miRNA:   3'- gCGCuuGUCCGCU---------------UCGa--------CUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 44941 0.7 0.500115
Target:  5'- gCGCGGGCGGGaucgccgccgcgcCGAcGGC-GAUGGCGUUg -3'
miRNA:   3'- -GCGCUUGUCC-------------GCU-UCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 47477 0.7 0.501144
Target:  5'- gGUGuauccCAGGUccaGGAGCuUGGUGGCGUCg -3'
miRNA:   3'- gCGCuu---GUCCG---CUUCG-ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 31548 0.7 0.510446
Target:  5'- gGCcuGCGGGgagaugccuacguCGAAGCUGgcGGCGUCg -3'
miRNA:   3'- gCGcuUGUCC-------------GCUUCGACuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 25959 0.7 0.53242
Target:  5'- aCGcCGAGCuGGCcAAGCUGGUGcGCGa- -3'
miRNA:   3'- -GC-GCUUGuCCGcUUCGACUAC-CGCag -5'
19109 3' -55.2 NC_004684.1 + 60189 0.7 0.53242
Target:  5'- aCGCGGccugGCAGGauguGCUGAUcGGCGUUg -3'
miRNA:   3'- -GCGCU----UGUCCgcuuCGACUA-CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 1796 0.7 0.543004
Target:  5'- uGCGAgaaGGGCGAGGUcGccGGUGUCa -3'
miRNA:   3'- gCGCUug-UCCGCUUCGaCuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 44125 0.69 0.553657
Target:  5'- uCGCuGGACAGGaacucgugcaGuuGCgUGGUGGCGUCg -3'
miRNA:   3'- -GCG-CUUGUCCg---------CuuCG-ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 66119 0.69 0.553657
Target:  5'- aCGCGuGCuGGCGAAGUggucGccGGUGUCg -3'
miRNA:   3'- -GCGCuUGuCCGCUUCGa---CuaCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.