miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 3' -55.2 NC_004684.1 + 1796 0.7 0.543004
Target:  5'- uGCGAgaaGGGCGAGGUcGccGGUGUCa -3'
miRNA:   3'- gCGCUug-UCCGCUUCGaCuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 3771 1.09 0.00125
Target:  5'- cCGCGAACAGGCGAAGCUGAUGGCGUCc -3'
miRNA:   3'- -GCGCUUGUCCGCUUCGACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 3903 0.66 0.747449
Target:  5'- gGC--GCAGGCGcAGCUGGaGGCcUCg -3'
miRNA:   3'- gCGcuUGUCCGCuUCGACUaCCGcAG- -5'
19109 3' -55.2 NC_004684.1 + 5214 0.67 0.705396
Target:  5'- cCGUGcucCAGGUGAGGCc-AUGGUGUCc -3'
miRNA:   3'- -GCGCuu-GUCCGCUUCGacUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 6847 0.66 0.747449
Target:  5'- gCGCGAA-GGGCGAcGCcgUGGUGGUGc- -3'
miRNA:   3'- -GCGCUUgUCCGCUuCG--ACUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 11276 0.73 0.368101
Target:  5'- gGUGAugAGcGCGGAGCUGAUcGGCa-- -3'
miRNA:   3'- gCGCUugUC-CGCUUCGACUA-CCGcag -5'
19109 3' -55.2 NC_004684.1 + 11357 0.73 0.342907
Target:  5'- gCGCGAGaCccGCGAGGUgccggUGGUGGCGUCc -3'
miRNA:   3'- -GCGCUU-GucCGCUUCG-----ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 14682 0.67 0.705396
Target:  5'- -aCGAGCGuGGCGAGGCcGAcgGGCG-Cg -3'
miRNA:   3'- gcGCUUGU-CCGCUUCGaCUa-CCGCaG- -5'
19109 3' -55.2 NC_004684.1 + 17992 0.67 0.705396
Target:  5'- cCGUGAcaAGGCuGAGGUcGAUGGCGa- -3'
miRNA:   3'- -GCGCUugUCCG-CUUCGaCUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 18453 0.67 0.716043
Target:  5'- -cCGAGCAGGaCGAcggcaccgAGCUGGUGcUGUCg -3'
miRNA:   3'- gcGCUUGUCC-GCU--------UCGACUACcGCAG- -5'
19109 3' -55.2 NC_004684.1 + 21216 0.66 0.747449
Target:  5'- aCGC--GCAGGCGcuucacuuCUGGUGGCGUg -3'
miRNA:   3'- -GCGcuUGUCCGCuuc-----GACUACCGCAg -5'
19109 3' -55.2 NC_004684.1 + 21303 0.69 0.596802
Target:  5'- uGCGcaacGCAGGCGAGGC-GGUGGUc-- -3'
miRNA:   3'- gCGCu---UGUCCGCUUCGaCUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 22243 0.66 0.745384
Target:  5'- gCGCGAucaacgcGCAGGCGcGAGCaUGGgaccgccUGGCGg- -3'
miRNA:   3'- -GCGCU-------UGUCCGC-UUCG-ACU-------ACCGCag -5'
19109 3' -55.2 NC_004684.1 + 25231 0.68 0.618585
Target:  5'- uGCGGcgcucucgacccAUAGGCcguGCgUGGUGGCGUCg -3'
miRNA:   3'- gCGCU------------UGUCCGcuuCG-ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 25959 0.7 0.53242
Target:  5'- aCGcCGAGCuGGCcAAGCUGGUGcGCGa- -3'
miRNA:   3'- -GC-GCUUGuCCGcUUCGACUAC-CGCag -5'
19109 3' -55.2 NC_004684.1 + 27966 0.67 0.705396
Target:  5'- uCGcCGAACAGcccgagaguGCGGAGUUcGgcGGCGUCu -3'
miRNA:   3'- -GC-GCUUGUC---------CGCUUCGA-CuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 30164 0.66 0.73708
Target:  5'- aGUGGGCGaucaacgccgucGGCGGcgAGCUGGUGGCc-- -3'
miRNA:   3'- gCGCUUGU------------CCGCU--UCGACUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 30322 0.67 0.698973
Target:  5'- cCGCGAacagGCAGGCGAucugcugcgccagcaGGUUGuUGGUGa- -3'
miRNA:   3'- -GCGCU----UGUCCGCU---------------UCGACuACCGCag -5'
19109 3' -55.2 NC_004684.1 + 30567 0.66 0.757703
Target:  5'- -uCGAccucGguGGUGGAGCUGGUcugGGUGUCg -3'
miRNA:   3'- gcGCU----UguCCGCUUCGACUA---CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 30624 0.67 0.726608
Target:  5'- aGCGucggcacCGGGCGcGGCccUGgcGGCGUCa -3'
miRNA:   3'- gCGCuu-----GUCCGCuUCG--ACuaCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.