miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 3' -55.2 NC_004684.1 + 31548 0.7 0.510446
Target:  5'- gGCcuGCGGGgagaugccuacguCGAAGCUGgcGGCGUCg -3'
miRNA:   3'- gCGcuUGUCC-------------GCUUCGACuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 35413 0.68 0.640414
Target:  5'- uGCGggUAGaucagcGCGGAGgUGGugaucggcUGGCGUCg -3'
miRNA:   3'- gCGCuuGUC------CGCUUCgACU--------ACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 36860 0.74 0.296327
Target:  5'- aCGUGGAagaAGGCGAcauGCUGGUGGCcgugGUCg -3'
miRNA:   3'- -GCGCUUg--UCCGCUu--CGACUACCG----CAG- -5'
19109 3' -55.2 NC_004684.1 + 40734 0.66 0.73708
Target:  5'- gCGCGGcGgGGGCGGuGGC-GGUGGUGUUg -3'
miRNA:   3'- -GCGCU-UgUCCGCU-UCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 42190 0.72 0.403619
Target:  5'- gGUGAGCAGugggccGUGGAGCUGGUGGCc-- -3'
miRNA:   3'- gCGCUUGUC------CGCUUCGACUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 44125 0.69 0.553657
Target:  5'- uCGCuGGACAGGaacucgugcaGuuGCgUGGUGGCGUCg -3'
miRNA:   3'- -GCG-CUUGUCCg---------CuuCG-ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 44673 0.66 0.77782
Target:  5'- uGCG-GCGGcGCGAuGCcGAugucgcUGGCGUCg -3'
miRNA:   3'- gCGCuUGUC-CGCUuCGaCU------ACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 44941 0.7 0.500115
Target:  5'- gCGCGGGCGGGaucgccgccgcgcCGAcGGC-GAUGGCGUUg -3'
miRNA:   3'- -GCGCUUGUCC-------------GCU-UCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 45843 0.66 0.77782
Target:  5'- gGCGGuCAugccGCGcucGUUGAUGGCGUCg -3'
miRNA:   3'- gCGCUuGUc---CGCuu-CGACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 45920 0.69 0.607683
Target:  5'- gCGCucGCGGGCaugcAGUUcGAUGGCGUCc -3'
miRNA:   3'- -GCGcuUGUCCGcu--UCGA-CUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 46340 0.69 0.607683
Target:  5'- gGCGAACAcGaugGGAGCgUGGUGGuCGUCg -3'
miRNA:   3'- gCGCUUGUcCg--CUUCG-ACUACC-GCAG- -5'
19109 3' -55.2 NC_004684.1 + 46876 0.67 0.713919
Target:  5'- gGCGAugacgccgccuuCGGGaccauacGGCUGAUGGUGUCg -3'
miRNA:   3'- gCGCUu-----------GUCCgcu----UCGACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 47477 0.7 0.501144
Target:  5'- gGUGuauccCAGGUccaGGAGCuUGGUGGCGUCg -3'
miRNA:   3'- gCGCuu---GUCCG---CUUCG-ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 47859 0.75 0.281932
Target:  5'- gCGCGAACcggAGGCGguGCcGGUGaGCGUCu -3'
miRNA:   3'- -GCGCUUG---UCCGCuuCGaCUAC-CGCAG- -5'
19109 3' -55.2 NC_004684.1 + 48040 0.76 0.235912
Target:  5'- gCGCGAuCAGGCGgcGCaugcgGAUGGCGg- -3'
miRNA:   3'- -GCGCUuGUCCGCuuCGa----CUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 48956 0.66 0.77782
Target:  5'- aCGUcGGCGGGCGggGUggccgGGgcggGcGCGUCg -3'
miRNA:   3'- -GCGcUUGUCCGCuuCGa----CUa---C-CGCAG- -5'
19109 3' -55.2 NC_004684.1 + 51135 0.69 0.607683
Target:  5'- gCGCGAACaccGGGCG-AGCgacguaauggGAUgcGGCGUCc -3'
miRNA:   3'- -GCGCUUG---UCCGCuUCGa---------CUA--CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 51690 0.66 0.73708
Target:  5'- cCGgGAGCA--CGAuGCcGGUGGCGUCg -3'
miRNA:   3'- -GCgCUUGUccGCUuCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 51914 0.73 0.376778
Target:  5'- gGCGAACGGGU--GGCUGGUGGUc-- -3'
miRNA:   3'- gCGCUUGUCCGcuUCGACUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 53457 0.67 0.720279
Target:  5'- cCGCGAgugucagcaccggcaACGGGUGGuuGGCcaGGUaGGCGUCg -3'
miRNA:   3'- -GCGCU---------------UGUCCGCU--UCGa-CUA-CCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.