Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19109 | 3' | -55.2 | NC_004684.1 | + | 66371 | 0.68 | 0.629498 |
Target: 5'- aCGCGggUguuggGGGUGAAGUccgGcAUGGUGUCc -3' miRNA: 3'- -GCGCuuG-----UCCGCUUCGa--C-UACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 66119 | 0.69 | 0.553657 |
Target: 5'- aCGCGuGCuGGCGAAGUggucGccGGUGUCg -3' miRNA: 3'- -GCGCuUGuCCGCUUCGa---CuaCCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 65578 | 0.67 | 0.708598 |
Target: 5'- uGCGAGCAggccgaugacaccGGCGAccucgcccuucucgcAGCUGuUGGCG-Cg -3' miRNA: 3'- gCGCUUGU-------------CCGCU---------------UCGACuACCGCaG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 65021 | 0.67 | 0.726608 |
Target: 5'- uGUGGccAUAGGCGAccucguGGCUGA-GGuCGUCc -3' miRNA: 3'- gCGCU--UGUCCGCU------UCGACUaCC-GCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 64744 | 0.67 | 0.726608 |
Target: 5'- gGcCGAccuGCuGGCcGAGCUGGUgccaGGCGUCg -3' miRNA: 3'- gC-GCU---UGuCCGcUUCGACUA----CCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 63950 | 0.69 | 0.56437 |
Target: 5'- gGCGAACAccguGGUGccGCUGAcugUGGCGg- -3' miRNA: 3'- gCGCUUGU----CCGCuuCGACU---ACCGCag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 63918 | 0.66 | 0.77782 |
Target: 5'- uGCGGcCcGGCGuGGCUGAgcuugGGCGa- -3' miRNA: 3'- gCGCUuGuCCGCuUCGACUa----CCGCag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 62806 | 0.67 | 0.705396 |
Target: 5'- uGcCGGGCAGGCGGgggagcuuucaGGCcGAccgGGUGUCg -3' miRNA: 3'- gC-GCUUGUCCGCU-----------UCGaCUa--CCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 62780 | 0.72 | 0.403619 |
Target: 5'- gGCGGGCAGGUGAugAGCaGGUuucGCGUCa -3' miRNA: 3'- gCGCUUGUCCGCU--UCGaCUAc--CGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 61350 | 0.75 | 0.274945 |
Target: 5'- gGCGGcCAGGUGAAuGgUGGUGGCGUUc -3' miRNA: 3'- gCGCUuGUCCGCUU-CgACUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 60954 | 0.67 | 0.683902 |
Target: 5'- uGCGugcuguACAccuCGuGGCUGGUGGCGUCg -3' miRNA: 3'- gCGCu-----UGUcc-GCuUCGACUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 60189 | 0.7 | 0.53242 |
Target: 5'- aCGCGGccugGCAGGauguGCUGAUcGGCGUUg -3' miRNA: 3'- -GCGCU----UGUCCgcuuCGACUA-CCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 59299 | 0.68 | 0.628407 |
Target: 5'- gGUGGGCAGGCcggugucGggGUcGAUGGCGc- -3' miRNA: 3'- gCGCUUGUCCG-------CuuCGaCUACCGCag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 58534 | 0.71 | 0.494984 |
Target: 5'- gGCGcuCAGGCGAcacguccaggcccauGGCcagucgggcGAUGGCGUCg -3' miRNA: 3'- gCGCuuGUCCGCU---------------UCGa--------CUACCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 58123 | 0.72 | 0.422173 |
Target: 5'- cCGCGAACAacGCGAccGGCUGAucgacaUGGCGaUCa -3' miRNA: 3'- -GCGCUUGUc-CGCU--UCGACU------ACCGC-AG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 57193 | 0.66 | 0.76783 |
Target: 5'- gGCGGGCcuggaAGGCGGcGGCgcGAUGGUGcUCa -3' miRNA: 3'- gCGCUUG-----UCCGCU-UCGa-CUACCGC-AG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 57033 | 0.68 | 0.662213 |
Target: 5'- gCGCGAucucgcGCAuguccuccccGGCGggGUcGAUGGCGg- -3' miRNA: 3'- -GCGCU------UGU----------CCGCuuCGaCUACCGCag -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 53593 | 0.67 | 0.726608 |
Target: 5'- gGCGuuGCGGGCGAcaccgcGCUGGaGGCG-Ca -3' miRNA: 3'- gCGCu-UGUCCGCUu-----CGACUaCCGCaG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 53457 | 0.67 | 0.720279 |
Target: 5'- cCGCGAgugucagcaccggcaACGGGUGGuuGGCcaGGUaGGCGUCg -3' miRNA: 3'- -GCGCU---------------UGUCCGCU--UCGa-CUA-CCGCAG- -5' |
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19109 | 3' | -55.2 | NC_004684.1 | + | 51914 | 0.73 | 0.376778 |
Target: 5'- gGCGAACGGGU--GGCUGGUGGUc-- -3' miRNA: 3'- gCGCUUGUCCGcuUCGACUACCGcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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