miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 3' -55.2 NC_004684.1 + 30624 0.67 0.726608
Target:  5'- aGCGucggcacCGGGCGcGGCccUGgcGGCGUCa -3'
miRNA:   3'- gCGCuu-----GUCCGCuUCG--ACuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 53593 0.67 0.726608
Target:  5'- gGCGuuGCGGGCGAcaccgcGCUGGaGGCG-Ca -3'
miRNA:   3'- gCGCu-UGUCCGCUu-----CGACUaCCGCaG- -5'
19109 3' -55.2 NC_004684.1 + 51690 0.66 0.73708
Target:  5'- cCGgGAGCA--CGAuGCcGGUGGCGUCg -3'
miRNA:   3'- -GCgCUUGUccGCUuCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 3903 0.66 0.747449
Target:  5'- gGC--GCAGGCGcAGCUGGaGGCcUCg -3'
miRNA:   3'- gCGcuUGUCCGCuUCGACUaCCGcAG- -5'
19109 3' -55.2 NC_004684.1 + 30567 0.66 0.757703
Target:  5'- -uCGAccucGguGGUGGAGCUGGUcugGGUGUCg -3'
miRNA:   3'- gcGCU----UguCCGCUUCGACUA---CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 35413 0.68 0.640414
Target:  5'- uGCGggUAGaucagcGCGGAGgUGGugaucggcUGGCGUCg -3'
miRNA:   3'- gCGCuuGUC------CGCUUCgACU--------ACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 59299 0.68 0.628407
Target:  5'- gGUGGGCAGGCcggugucGggGUcGAUGGCGc- -3'
miRNA:   3'- gCGCUUGUCCG-------CuuCGaCUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 3771 1.09 0.00125
Target:  5'- cCGCGAACAGGCGAAGCUGAUGGCGUCc -3'
miRNA:   3'- -GCGCUUGUCCGCUUCGACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 62780 0.72 0.403619
Target:  5'- gGCGGGCAGGUGAugAGCaGGUuucGCGUCa -3'
miRNA:   3'- gCGCUUGUCCGCU--UCGaCUAc--CGCAG- -5'
19109 3' -55.2 NC_004684.1 + 58534 0.71 0.494984
Target:  5'- gGCGcuCAGGCGAcacguccaggcccauGGCcagucgggcGAUGGCGUCg -3'
miRNA:   3'- gCGCuuGUCCGCU---------------UCGa--------CUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 44941 0.7 0.500115
Target:  5'- gCGCGGGCGGGaucgccgccgcgcCGAcGGC-GAUGGCGUUg -3'
miRNA:   3'- -GCGCUUGUCC-------------GCU-UCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 47477 0.7 0.501144
Target:  5'- gGUGuauccCAGGUccaGGAGCuUGGUGGCGUCg -3'
miRNA:   3'- gCGCuu---GUCCG---CUUCG-ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 31548 0.7 0.510446
Target:  5'- gGCcuGCGGGgagaugccuacguCGAAGCUGgcGGCGUCg -3'
miRNA:   3'- gCGcuUGUCC-------------GCUUCGACuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 44125 0.69 0.553657
Target:  5'- uCGCuGGACAGGaacucgugcaGuuGCgUGGUGGCGUCg -3'
miRNA:   3'- -GCG-CUUGUCCg---------CuuCG-ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 63950 0.69 0.56437
Target:  5'- gGCGAACAccguGGUGccGCUGAcugUGGCGg- -3'
miRNA:   3'- gCGCUUGU----CCGCuuCGACU---ACCGCag -5'
19109 3' -55.2 NC_004684.1 + 51135 0.69 0.607683
Target:  5'- gCGCGAACaccGGGCG-AGCgacguaauggGAUgcGGCGUCc -3'
miRNA:   3'- -GCGCUUG---UCCGCuUCGa---------CUA--CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 25231 0.68 0.618585
Target:  5'- uGCGGcgcucucgacccAUAGGCcguGCgUGGUGGCGUCg -3'
miRNA:   3'- gCGCU------------UGUCCGcuuCG-ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 63918 0.66 0.77782
Target:  5'- uGCGGcCcGGCGuGGCUGAgcuugGGCGa- -3'
miRNA:   3'- gCGCUuGuCCGCuUCGACUa----CCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.