miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 3' -55.2 NC_004684.1 + 25231 0.68 0.618585
Target:  5'- uGCGGcgcucucgacccAUAGGCcguGCgUGGUGGCGUCg -3'
miRNA:   3'- gCGCU------------UGUCCGcuuCG-ACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 51690 0.66 0.73708
Target:  5'- cCGgGAGCA--CGAuGCcGGUGGCGUCg -3'
miRNA:   3'- -GCgCUUGUccGCUuCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 3771 1.09 0.00125
Target:  5'- cCGCGAACAGGCGAAGCUGAUGGCGUCc -3'
miRNA:   3'- -GCGCUUGUCCGCUUCGACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 45920 0.69 0.607683
Target:  5'- gCGCucGCGGGCaugcAGUUcGAUGGCGUCc -3'
miRNA:   3'- -GCGcuUGUCCGcu--UCGA-CUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 51914 0.73 0.376778
Target:  5'- gGCGAACGGGU--GGCUGGUGGUc-- -3'
miRNA:   3'- gCGCUUGUCCGcuUCGACUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 11276 0.73 0.368101
Target:  5'- gGUGAugAGcGCGGAGCUGAUcGGCa-- -3'
miRNA:   3'- gCGCUugUC-CGCUUCGACUA-CCGcag -5'
19109 3' -55.2 NC_004684.1 + 47859 0.75 0.281932
Target:  5'- gCGCGAACcggAGGCGguGCcGGUGaGCGUCu -3'
miRNA:   3'- -GCGCUUG---UCCGCuuCGaCUAC-CGCAG- -5'
19109 3' -55.2 NC_004684.1 + 6847 0.66 0.747449
Target:  5'- gCGCGAA-GGGCGAcGCcgUGGUGGUGc- -3'
miRNA:   3'- -GCGCUUgUCCGCUuCG--ACUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 22243 0.66 0.745384
Target:  5'- gCGCGAucaacgcGCAGGCGcGAGCaUGGgaccgccUGGCGg- -3'
miRNA:   3'- -GCGCU-------UGUCCGC-UUCG-ACU-------ACCGCag -5'
19109 3' -55.2 NC_004684.1 + 40734 0.66 0.73708
Target:  5'- gCGCGGcGgGGGCGGuGGC-GGUGGUGUUg -3'
miRNA:   3'- -GCGCU-UgUCCGCU-UCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 21303 0.69 0.596802
Target:  5'- uGCGcaacGCAGGCGAGGC-GGUGGUc-- -3'
miRNA:   3'- gCGCu---UGUCCGCUUCGaCUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 66119 0.69 0.553657
Target:  5'- aCGCGuGCuGGCGAAGUggucGccGGUGUCg -3'
miRNA:   3'- -GCGCuUGuCCGCUUCGa---CuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 1796 0.7 0.543004
Target:  5'- uGCGAgaaGGGCGAGGUcGccGGUGUCa -3'
miRNA:   3'- gCGCUug-UCCGCUUCGaCuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 60189 0.7 0.53242
Target:  5'- aCGCGGccugGCAGGauguGCUGAUcGGCGUUg -3'
miRNA:   3'- -GCGCU----UGUCCgcuuCGACUA-CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 17992 0.67 0.705396
Target:  5'- cCGUGAcaAGGCuGAGGUcGAUGGCGa- -3'
miRNA:   3'- -GCGCUugUCCG-CUUCGaCUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 18453 0.67 0.716043
Target:  5'- -cCGAGCAGGaCGAcggcaccgAGCUGGUGcUGUCg -3'
miRNA:   3'- gcGCUUGUCC-GCU--------UCGACUACcGCAG- -5'
19109 3' -55.2 NC_004684.1 + 53457 0.67 0.720279
Target:  5'- cCGCGAgugucagcaccggcaACGGGUGGuuGGCcaGGUaGGCGUCg -3'
miRNA:   3'- -GCGCU---------------UGUCCGCU--UCGa-CUA-CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 64744 0.67 0.726608
Target:  5'- gGcCGAccuGCuGGCcGAGCUGGUgccaGGCGUCg -3'
miRNA:   3'- gC-GCU---UGuCCGcUUCGACUA----CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 65021 0.67 0.726608
Target:  5'- uGUGGccAUAGGCGAccucguGGCUGA-GGuCGUCc -3'
miRNA:   3'- gCGCU--UGUCCGCU------UCGACUaCC-GCAG- -5'
19109 3' -55.2 NC_004684.1 + 30164 0.66 0.73708
Target:  5'- aGUGGGCGaucaacgccgucGGCGGcgAGCUGGUGGCc-- -3'
miRNA:   3'- gCGCUUGU------------CCGCU--UCGACUACCGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.