miRNA display CGI


Results 41 - 58 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 3' -55.2 NC_004684.1 + 36860 0.74 0.296327
Target:  5'- aCGUGGAagaAGGCGAcauGCUGGUGGCcgugGUCg -3'
miRNA:   3'- -GCGCUUg--UCCGCUu--CGACUACCG----CAG- -5'
19109 3' -55.2 NC_004684.1 + 47859 0.75 0.281932
Target:  5'- gCGCGAACcggAGGCGguGCcGGUGaGCGUCu -3'
miRNA:   3'- -GCGCUUG---UCCGCuuCGaCUAC-CGCAG- -5'
19109 3' -55.2 NC_004684.1 + 61350 0.75 0.274945
Target:  5'- gGCGGcCAGGUGAAuGgUGGUGGCGUUc -3'
miRNA:   3'- gCGCUuGUCCGCUU-CgACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 45920 0.69 0.607683
Target:  5'- gCGCucGCGGGCaugcAGUUcGAUGGCGUCc -3'
miRNA:   3'- -GCGcuUGUCCGcu--UCGA-CUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 46340 0.69 0.607683
Target:  5'- gGCGAACAcGaugGGAGCgUGGUGGuCGUCg -3'
miRNA:   3'- gCGCUUGUcCg--CUUCG-ACUACC-GCAG- -5'
19109 3' -55.2 NC_004684.1 + 22243 0.66 0.745384
Target:  5'- gCGCGAucaacgcGCAGGCGcGAGCaUGGgaccgccUGGCGg- -3'
miRNA:   3'- -GCGCU-------UGUCCGC-UUCG-ACU-------ACCGCag -5'
19109 3' -55.2 NC_004684.1 + 40734 0.66 0.73708
Target:  5'- gCGCGGcGgGGGCGGuGGC-GGUGGUGUUg -3'
miRNA:   3'- -GCGCU-UgUCCGCU-UCGaCUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 30164 0.66 0.73708
Target:  5'- aGUGGGCGaucaacgccgucGGCGGcgAGCUGGUGGCc-- -3'
miRNA:   3'- gCGCUUGU------------CCGCU--UCGACUACCGcag -5'
19109 3' -55.2 NC_004684.1 + 65021 0.67 0.726608
Target:  5'- uGUGGccAUAGGCGAccucguGGCUGA-GGuCGUCc -3'
miRNA:   3'- gCGCU--UGUCCGCU------UCGACUaCC-GCAG- -5'
19109 3' -55.2 NC_004684.1 + 64744 0.67 0.726608
Target:  5'- gGcCGAccuGCuGGCcGAGCUGGUgccaGGCGUCg -3'
miRNA:   3'- gC-GCU---UGuCCGcUUCGACUA----CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 53457 0.67 0.720279
Target:  5'- cCGCGAgugucagcaccggcaACGGGUGGuuGGCcaGGUaGGCGUCg -3'
miRNA:   3'- -GCGCU---------------UGUCCGCU--UCGa-CUA-CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 17992 0.67 0.705396
Target:  5'- cCGUGAcaAGGCuGAGGUcGAUGGCGa- -3'
miRNA:   3'- -GCGCUugUCCG-CUUCGaCUACCGCag -5'
19109 3' -55.2 NC_004684.1 + 5214 0.67 0.705396
Target:  5'- cCGUGcucCAGGUGAGGCc-AUGGUGUCc -3'
miRNA:   3'- -GCGCuu-GUCCGCUUCGacUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 62806 0.67 0.705396
Target:  5'- uGcCGGGCAGGCGGgggagcuuucaGGCcGAccgGGUGUCg -3'
miRNA:   3'- gC-GCUUGUCCGCU-----------UCGaCUa--CCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 27966 0.67 0.705396
Target:  5'- uCGcCGAACAGcccgagaguGCGGAGUUcGgcGGCGUCu -3'
miRNA:   3'- -GC-GCUUGUC---------CGCUUCGA-CuaCCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 60954 0.67 0.683902
Target:  5'- uGCGugcuguACAccuCGuGGCUGGUGGCGUCg -3'
miRNA:   3'- gCGCu-----UGUcc-GCuUCGACUACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 66371 0.68 0.629498
Target:  5'- aCGCGggUguuggGGGUGAAGUccgGcAUGGUGUCc -3'
miRNA:   3'- -GCGCuuG-----UCCGCUUCGa--C-UACCGCAG- -5'
19109 3' -55.2 NC_004684.1 + 48040 0.76 0.235912
Target:  5'- gCGCGAuCAGGCGgcGCaugcgGAUGGCGg- -3'
miRNA:   3'- -GCGCUuGUCCGCuuCGa----CUACCGCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.