miRNA display CGI


Results 1 - 20 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 15242 0.66 0.342119
Target:  5'- cAGCUACgGCC-CGCCGCuGCcacgcaagacacuggAGGCCu -3'
miRNA:   3'- aUUGGUGgCGGcGCGGCG-CG---------------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 17500 0.66 0.339043
Target:  5'- cUGAUUACgcaGCUGCGCgaGCGCGGuGCCa -3'
miRNA:   3'- -AUUGGUGg--CGGCGCGg-CGCGUC-CGGc -5'
19109 5' -64.3 NC_004684.1 + 51110 0.66 0.339043
Target:  5'- ---aCAgUGaaGCGCCGCGuCGGGCCc -3'
miRNA:   3'- auugGUgGCggCGCGGCGC-GUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 22820 0.66 0.339043
Target:  5'- cGACCGgCaguucCCG-GCgGUGCAGGCCGg -3'
miRNA:   3'- aUUGGUgGc----GGCgCGgCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 41892 0.66 0.339043
Target:  5'- cAGCCGCuCGCCG-GUCGC-CuGGCCc -3'
miRNA:   3'- aUUGGUG-GCGGCgCGGCGcGuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 60340 0.66 0.339043
Target:  5'- cGAUCACCGCgCGUucgGCCaGCGgugcCAGGUCGg -3'
miRNA:   3'- aUUGGUGGCG-GCG---CGG-CGC----GUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 64084 0.66 0.339043
Target:  5'- --cCCACucguCGUCGCGCuCGCGCuGuGCCa -3'
miRNA:   3'- auuGGUG----GCGGCGCG-GCGCGuC-CGGc -5'
19109 5' -64.3 NC_004684.1 + 61988 0.66 0.338277
Target:  5'- gAGCCAcccgcacCCGCCGCGCacaauCGCGaCGGGgaCGg -3'
miRNA:   3'- aUUGGU-------GGCGGCGCG-----GCGC-GUCCg-GC- -5'
19109 5' -64.3 NC_004684.1 + 54497 0.66 0.33144
Target:  5'- -cACCGCUgGCgGCGa-GCGCAGGCUc -3'
miRNA:   3'- auUGGUGG-CGgCGCggCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 23131 0.66 0.33144
Target:  5'- gGugUGCCGCCGuCGaCUGCGCcauGGUCa -3'
miRNA:   3'- aUugGUGGCGGC-GC-GGCGCGu--CCGGc -5'
19109 5' -64.3 NC_004684.1 + 65420 0.66 0.33144
Target:  5'- --uUCGCgCGCCagGCGCUGCGCuGGCg- -3'
miRNA:   3'- auuGGUG-GCGG--CGCGGCGCGuCCGgc -5'
19109 5' -64.3 NC_004684.1 + 43271 0.66 0.33144
Target:  5'- -uACgGCUGCUGCGUCgGCGUgccGGGCUGc -3'
miRNA:   3'- auUGgUGGCGGCGCGG-CGCG---UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 64285 0.66 0.33144
Target:  5'- aGAUgACCG-CGCGCaguGCGCccuGGCCGu -3'
miRNA:   3'- aUUGgUGGCgGCGCGg--CGCGu--CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 54272 0.66 0.33144
Target:  5'- cAGCCAgCGCCGCcacccgGCCgggggugcGCGCAucGGCCc -3'
miRNA:   3'- aUUGGUgGCGGCG------CGG--------CGCGU--CCGGc -5'
19109 5' -64.3 NC_004684.1 + 11960 0.66 0.33144
Target:  5'- aGACCACCGgCGCa-CGCGCuGGgUGg -3'
miRNA:   3'- aUUGGUGGCgGCGcgGCGCGuCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 1393 0.66 0.33144
Target:  5'- aGGCCGCCGuuGCacugGCCaGCGaccuggAGGCCu -3'
miRNA:   3'- aUUGGUGGCggCG----CGG-CGCg-----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 22364 0.66 0.33144
Target:  5'- cGGCgGCgGUCGCGCuggcgguggaCGUGCAGGCgGc -3'
miRNA:   3'- aUUGgUGgCGGCGCG----------GCGCGUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 12206 0.66 0.33144
Target:  5'- -cGCCGCCGCCaGCGgUGCGUucuCCGg -3'
miRNA:   3'- auUGGUGGCGG-CGCgGCGCGuccGGC- -5'
19109 5' -64.3 NC_004684.1 + 27064 0.66 0.33144
Target:  5'- --uCCAgCGCCGgGUC-CGCAGGCg- -3'
miRNA:   3'- auuGGUgGCGGCgCGGcGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 53601 0.66 0.33144
Target:  5'- gGGCgACa-CCGCGCUggagGCGCAGGuuGg -3'
miRNA:   3'- aUUGgUGgcGGCGCGG----CGCGUCCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.