miRNA display CGI


Results 1 - 20 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 6702 0.66 0.316613
Target:  5'- cUGGCCACCGUCgGCGCga-GCAaGCCGa -3'
miRNA:   3'- -AUUGGUGGCGG-CGCGgcgCGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 40330 0.66 0.30939
Target:  5'- -cACgACCuCgGCGCUGgGCAGGUCGc -3'
miRNA:   3'- auUGgUGGcGgCGCGGCgCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 1280 0.66 0.316613
Target:  5'- gUGGCCAuguuCCGguaCGCGCgCGaCGCGuGGCCGg -3'
miRNA:   3'- -AUUGGU----GGCg--GCGCG-GC-GCGU-CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 15242 0.66 0.342119
Target:  5'- cAGCUACgGCC-CGCCGCuGCcacgcaagacacuggAGGCCu -3'
miRNA:   3'- aUUGGUGgCGGcGCGGCG-CG---------------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 20794 0.66 0.323223
Target:  5'- aAGCCACCgGCaCGCaacgccaGCCGCGacgacuGGGCUGa -3'
miRNA:   3'- aUUGGUGG-CG-GCG-------CGGCGCg-----UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 58088 0.66 0.302292
Target:  5'- cAGCUcgACCGggagCGCGCCGaGCAuGGCCGg -3'
miRNA:   3'- aUUGG--UGGCg---GCGCGGCgCGU-CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 53348 0.66 0.302292
Target:  5'- -cGCCACCGCCuuGCUG-GuCGGGUCGc -3'
miRNA:   3'- auUGGUGGCGGcgCGGCgC-GUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 65420 0.66 0.33144
Target:  5'- --uUCGCgCGCCagGCGCUGCGCuGGCg- -3'
miRNA:   3'- auuGGUG-GCGG--CGCGGCGCGuCCGgc -5'
19109 5' -64.3 NC_004684.1 + 54272 0.66 0.33144
Target:  5'- cAGCCAgCGCCGCcacccgGCCgggggugcGCGCAucGGCCc -3'
miRNA:   3'- aUUGGUgGCGGCG------CGG--------CGCGU--CCGGc -5'
19109 5' -64.3 NC_004684.1 + 23428 0.66 0.30939
Target:  5'- --cCCGgUGCUGCGCa-CGguGGCCGa -3'
miRNA:   3'- auuGGUgGCGGCGCGgcGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 24182 0.66 0.30939
Target:  5'- -uGCCGCCGCCcaaaaugccgGUGCCuGCGguGcCCGa -3'
miRNA:   3'- auUGGUGGCGG----------CGCGG-CGCguCcGGC- -5'
19109 5' -64.3 NC_004684.1 + 61988 0.66 0.338277
Target:  5'- gAGCCAcccgcacCCGCCGCGCacaauCGCGaCGGGgaCGg -3'
miRNA:   3'- aUUGGU-------GGCGGCGCG-----GCGC-GUCCg-GC- -5'
19109 5' -64.3 NC_004684.1 + 22364 0.66 0.33144
Target:  5'- cGGCgGCgGUCGCGCuggcgguggaCGUGCAGGCgGc -3'
miRNA:   3'- aUUGgUGgCGGCGCG----------GCGCGUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 42816 0.66 0.30939
Target:  5'- --cCCAacUCGCUG-GCCGCuCAGGCCGc -3'
miRNA:   3'- auuGGU--GGCGGCgCGGCGcGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 63220 0.66 0.323964
Target:  5'- cGGCCACCGgCGgcucguUGCCGgGCGucGGCCc -3'
miRNA:   3'- aUUGGUGGCgGC------GCGGCgCGU--CCGGc -5'
19109 5' -64.3 NC_004684.1 + 27064 0.66 0.33144
Target:  5'- --uCCAgCGCCGgGUC-CGCAGGCg- -3'
miRNA:   3'- auuGGUgGCGGCgCGGcGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 22232 0.66 0.302292
Target:  5'- cGACgGCaC-CCGCGCgaucaaCGCGCAGGCgCGa -3'
miRNA:   3'- aUUGgUG-GcGGCGCG------GCGCGUCCG-GC- -5'
19109 5' -64.3 NC_004684.1 + 66497 0.66 0.323964
Target:  5'- aGGCCuUgGCgGCgGCCuCGCGGGCCGc -3'
miRNA:   3'- aUUGGuGgCGgCG-CGGcGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 64285 0.66 0.33144
Target:  5'- aGAUgACCG-CGCGCaguGCGCccuGGCCGu -3'
miRNA:   3'- aUUGgUGGCgGCGCGg--CGCGu--CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 8166 0.66 0.302292
Target:  5'- cAACCAgaUCGCCgGgGgCGCGCuGGGCCa -3'
miRNA:   3'- aUUGGU--GGCGG-CgCgGCGCG-UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.