Results 21 - 40 of 326 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 47080 | 0.66 | 0.302292 |
Target: 5'- aUGGCCGCCGCCGCcaugguGUCGgCGCAcuucucGCUGg -3' miRNA: 3'- -AUUGGUGGCGGCG------CGGC-GCGUc-----CGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 20794 | 0.66 | 0.323223 |
Target: 5'- aAGCCACCgGCaCGCaacgccaGCCGCGacgacuGGGCUGa -3' miRNA: 3'- aUUGGUGG-CG-GCG-------CGGCGCg-----UCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 28365 | 0.66 | 0.302292 |
Target: 5'- ---aCACCGCCGaGCCGUagAGGUCGa -3' miRNA: 3'- auugGUGGCGGCgCGGCGcgUCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 23428 | 0.66 | 0.30939 |
Target: 5'- --cCCGgUGCUGCGCa-CGguGGCCGa -3' miRNA: 3'- auuGGUgGCGGCGCGgcGCguCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 17376 | 0.66 | 0.302292 |
Target: 5'- -cGCUGCCGCCGaCGgUGCGCAcacccGGUCa -3' miRNA: 3'- auUGGUGGCGGC-GCgGCGCGU-----CCGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 66497 | 0.66 | 0.323964 |
Target: 5'- aGGCCuUgGCgGCgGCCuCGCGGGCCGc -3' miRNA: 3'- aUUGGuGgCGgCG-CGGcGCGUCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 42816 | 0.66 | 0.30939 |
Target: 5'- --cCCAacUCGCUG-GCCGCuCAGGCCGc -3' miRNA: 3'- auuGGU--GGCGGCgCGGCGcGUCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 64084 | 0.66 | 0.339043 |
Target: 5'- --cCCACucguCGUCGCGCuCGCGCuGuGCCa -3' miRNA: 3'- auuGGUG----GCGGCGCG-GCGCGuC-CGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 47569 | 0.66 | 0.314433 |
Target: 5'- -cGCCGCCGUcacaCGCGCUGaCgaacuccuuggccaGCAGGCCc -3' miRNA: 3'- auUGGUGGCG----GCGCGGC-G--------------CGUCCGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 24182 | 0.66 | 0.30939 |
Target: 5'- -uGCCGCCGCCcaaaaugccgGUGCCuGCGguGcCCGa -3' miRNA: 3'- auUGGUGGCGG----------CGCGG-CGCguCcGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 6702 | 0.66 | 0.316613 |
Target: 5'- cUGGCCACCGUCgGCGCga-GCAaGCCGa -3' miRNA: 3'- -AUUGGUGGCGG-CGCGgcgCGUcCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 1280 | 0.66 | 0.316613 |
Target: 5'- gUGGCCAuguuCCGguaCGCGCgCGaCGCGuGGCCGg -3' miRNA: 3'- -AUUGGU----GGCg--GCGCG-GC-GCGU-CCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 7501 | 0.66 | 0.30939 |
Target: 5'- cGugCGCCGCCGCaUCGgGguGGaCCu -3' miRNA: 3'- aUugGUGGCGGCGcGGCgCguCC-GGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 4782 | 0.66 | 0.302292 |
Target: 5'- -cGCCAgcaagCGCCuCGgCGCGguGGCCGa -3' miRNA: 3'- auUGGUg----GCGGcGCgGCGCguCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 61154 | 0.66 | 0.316613 |
Target: 5'- -cAUCACCGUCGaaggccugGCCGCccaGCuGGCCGa -3' miRNA: 3'- auUGGUGGCGGCg-------CGGCG---CGuCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 34642 | 0.66 | 0.302292 |
Target: 5'- -cGCCACCaggucgGCCGCGaCGUaccggucgauGUAGGCCGu -3' miRNA: 3'- auUGGUGG------CGGCGCgGCG----------CGUCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 22364 | 0.66 | 0.33144 |
Target: 5'- cGGCgGCgGUCGCGCuggcgguggaCGUGCAGGCgGc -3' miRNA: 3'- aUUGgUGgCGGCGCG----------GCGCGUCCGgC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 25217 | 0.66 | 0.316613 |
Target: 5'- -uGCuCACCGCgcaGUGCgGCGCucucgacccauAGGCCGu -3' miRNA: 3'- auUG-GUGGCGg--CGCGgCGCG-----------UCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 8166 | 0.66 | 0.302292 |
Target: 5'- cAACCAgaUCGCCgGgGgCGCGCuGGGCCa -3' miRNA: 3'- aUUGGU--GGCGG-CgCgGCGCG-UCCGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 65420 | 0.66 | 0.33144 |
Target: 5'- --uUCGCgCGCCagGCGCUGCGCuGGCg- -3' miRNA: 3'- auuGGUG-GCGG--CGCGGCGCGuCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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