miRNA display CGI


Results 41 - 60 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 42816 0.66 0.30939
Target:  5'- --cCCAacUCGCUG-GCCGCuCAGGCCGc -3'
miRNA:   3'- auuGGU--GGCGGCgCGGCGcGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 25217 0.66 0.316613
Target:  5'- -uGCuCACCGCgcaGUGCgGCGCucucgacccauAGGCCGu -3'
miRNA:   3'- auUG-GUGGCGg--CGCGgCGCG-----------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 27064 0.66 0.33144
Target:  5'- --uCCAgCGCCGgGUC-CGCAGGCg- -3'
miRNA:   3'- auuGGUgGCGGCgCGGcGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 3513 0.66 0.316613
Target:  5'- ---gCACCGCUGgGCC-CGaugaAGGCCGc -3'
miRNA:   3'- auugGUGGCGGCgCGGcGCg---UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 1280 0.66 0.316613
Target:  5'- gUGGCCAuguuCCGguaCGCGCgCGaCGCGuGGCCGg -3'
miRNA:   3'- -AUUGGU----GGCg--GCGCG-GC-GCGU-CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 54272 0.66 0.33144
Target:  5'- cAGCCAgCGCCGCcacccgGCCgggggugcGCGCAucGGCCc -3'
miRNA:   3'- aUUGGUgGCGGCG------CGG--------CGCGU--CCGGc -5'
19109 5' -64.3 NC_004684.1 + 28365 0.66 0.302292
Target:  5'- ---aCACCGCCGaGCCGUagAGGUCGa -3'
miRNA:   3'- auugGUGGCGGCgCGGCGcgUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 12206 0.66 0.33144
Target:  5'- -cGCCGCCGCCaGCGgUGCGUucuCCGg -3'
miRNA:   3'- auUGGUGGCGG-CGCgGCGCGuccGGC- -5'
19109 5' -64.3 NC_004684.1 + 1393 0.66 0.33144
Target:  5'- aGGCCGCCGuuGCacugGCCaGCGaccuggAGGCCu -3'
miRNA:   3'- aUUGGUGGCggCG----CGG-CGCg-----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 7129 0.66 0.323964
Target:  5'- -cGCCACCGCCGagguacacCCGgaaGguGGCCa -3'
miRNA:   3'- auUGGUGGCGGCgc------GGCg--CguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 65420 0.66 0.33144
Target:  5'- --uUCGCgCGCCagGCGCUGCGCuGGCg- -3'
miRNA:   3'- auuGGUG-GCGG--CGCGGCGCGuCCGgc -5'
19109 5' -64.3 NC_004684.1 + 17500 0.66 0.339043
Target:  5'- cUGAUUACgcaGCUGCGCgaGCGCGGuGCCa -3'
miRNA:   3'- -AUUGGUGg--CGGCGCGg-CGCGUC-CGGc -5'
19109 5' -64.3 NC_004684.1 + 22820 0.66 0.339043
Target:  5'- cGACCGgCaguucCCG-GCgGUGCAGGCCGg -3'
miRNA:   3'- aUUGGUgGc----GGCgCGgCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 64084 0.66 0.339043
Target:  5'- --cCCACucguCGUCGCGCuCGCGCuGuGCCa -3'
miRNA:   3'- auuGGUG----GCGGCGCG-GCGCGuC-CGGc -5'
19109 5' -64.3 NC_004684.1 + 65250 0.67 0.256114
Target:  5'- --uUCACCGaCGCGCCGaacgcaCGCAGGUCc -3'
miRNA:   3'- auuGGUGGCgGCGCGGC------GCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 11149 0.67 0.256114
Target:  5'- --gUCAUC-CCgGCGuuGCGCAGGCUGa -3'
miRNA:   3'- auuGGUGGcGG-CGCggCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 41646 0.67 0.275159
Target:  5'- aGAUCGCCuCCgGUGCgGCGUacgaAGGCCGg -3'
miRNA:   3'- aUUGGUGGcGG-CGCGgCGCG----UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 42733 0.67 0.256114
Target:  5'- -cACCGCCGUCgGCGaaGUGCAGugcgcGCCGg -3'
miRNA:   3'- auUGGUGGCGG-CGCggCGCGUC-----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 20111 0.67 0.25427
Target:  5'- cAGCCACCGCUGgGCggcggcaccaagaaCGUGCGGuucuucGCCGg -3'
miRNA:   3'- aUUGGUGGCGGCgCG--------------GCGCGUC------CGGC- -5'
19109 5' -64.3 NC_004684.1 + 60523 0.67 0.275159
Target:  5'- cGACCGCagGCUGaucuCGCCGCGCccGGuGCCGu -3'
miRNA:   3'- aUUGGUGg-CGGC----GCGGCGCG--UC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.