miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 43337 0.67 0.274507
Target:  5'- gUGACCguGCCGucgggguugaucaCCGCGCCGgGCAccuuGCCGg -3'
miRNA:   3'- -AUUGG--UGGC-------------GGCGCGGCgCGUc---CGGC- -5'
19109 5' -64.3 NC_004684.1 + 60980 0.67 0.281755
Target:  5'- -cGCCGCCGCCGaGCUGUaCAccucGGCCa -3'
miRNA:   3'- auUGGUGGCGGCgCGGCGcGU----CCGGc -5'
19109 5' -64.3 NC_004684.1 + 10186 0.67 0.281755
Target:  5'- cUGAgCACCaUCGCGCCGCcGCcuuccAGGCCc -3'
miRNA:   3'- -AUUgGUGGcGGCGCGGCG-CG-----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 51445 0.67 0.256114
Target:  5'- gAGCCGuaGCUcauGCGCC-CGguGGCCGa -3'
miRNA:   3'- aUUGGUggCGG---CGCGGcGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 57049 0.67 0.281755
Target:  5'- gGGCCACgGCaccaGCGCgGUGgCAGGCa- -3'
miRNA:   3'- aUUGGUGgCGg---CGCGgCGC-GUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 4415 0.67 0.26234
Target:  5'- --uCCugGCCGCCG-GaacaaCGCGCGGGCCu -3'
miRNA:   3'- auuGG--UGGCGGCgCg----GCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 65062 0.67 0.274507
Target:  5'- aUGACCGCCGCCaguuCGuCCuGCGCGGugaucauGCCGu -3'
miRNA:   3'- -AUUGGUGGCGGc---GC-GG-CGCGUC-------CGGC- -5'
19109 5' -64.3 NC_004684.1 + 62145 0.67 0.274507
Target:  5'- -cGCC-UCGCCGUGCCcggccuuGCGCAGGgCu -3'
miRNA:   3'- auUGGuGGCGGCGCGG-------CGCGUCCgGc -5'
19109 5' -64.3 NC_004684.1 + 50261 0.67 0.275159
Target:  5'- gAACCACCuuggggucGUCGCugGCCaGCGCcAGGCCc -3'
miRNA:   3'- aUUGGUGG--------CGGCG--CGG-CGCG-UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 23905 0.67 0.275159
Target:  5'- -uGCUGCCGCUGCGcCCGCcGCAccugcuGCCGc -3'
miRNA:   3'- auUGGUGGCGGCGC-GGCG-CGUc-----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 61909 0.67 0.275159
Target:  5'- gAACCACCucuaUCGCGggGUGCGGGCCa -3'
miRNA:   3'- aUUGGUGGc---GGCGCggCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 23944 0.67 0.284428
Target:  5'- -uGCUGCCGCCcCGCCGCaccgaccucggccucGCcGGGCCu -3'
miRNA:   3'- auUGGUGGCGGcGCGGCG---------------CG-UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 57072 0.67 0.281755
Target:  5'- cGGCCugCGuuGCGgCGCGCAcaucggugcGGgCGa -3'
miRNA:   3'- aUUGGugGCggCGCgGCGCGU---------CCgGC- -5'
19109 5' -64.3 NC_004684.1 + 41551 0.67 0.288475
Target:  5'- aGGCCgccgagcaucugGCCGCCGaUGCCGUuCuGGCCGc -3'
miRNA:   3'- aUUGG------------UGGCGGC-GCGGCGcGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 60543 0.67 0.295321
Target:  5'- -cACCACCaCgGCGUCGCccuucgcgccGUAGGCCa -3'
miRNA:   3'- auUGGUGGcGgCGCGGCG----------CGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 51694 0.67 0.281755
Target:  5'- uUGACCAgCGCCggaccuuuaccgGUGCCGCcuucCAGGUCGu -3'
miRNA:   3'- -AUUGGUgGCGG------------CGCGGCGc---GUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 42863 0.67 0.295321
Target:  5'- cGGCaCACCGCCGUagauggcaccGCCGaaCGCGcGGCCc -3'
miRNA:   3'- aUUG-GUGGCGGCG----------CGGC--GCGU-CCGGc -5'
19109 5' -64.3 NC_004684.1 + 8743 0.67 0.281755
Target:  5'- --uUCGCCGCCGCGCC-CgGCGaGCUGa -3'
miRNA:   3'- auuGGUGGCGGCGCGGcG-CGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 53410 0.67 0.275159
Target:  5'- gUGGCCggGCUgGCCuGCGCCGCGCGacuGCCa -3'
miRNA:   3'- -AUUGG--UGG-CGG-CGCGGCGCGUc--CGGc -5'
19109 5' -64.3 NC_004684.1 + 13640 0.67 0.256114
Target:  5'- --uUCGCCGCCGCGCaccuGCGUGGuGUCu -3'
miRNA:   3'- auuGGUGGCGGCGCGg---CGCGUC-CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.