miRNA display CGI


Results 81 - 100 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 42733 0.67 0.256114
Target:  5'- -cACCGCCGUCgGCGaaGUGCAGugcgcGCCGg -3'
miRNA:   3'- auUGGUGGCGG-CGCggCGCGUC-----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 11149 0.67 0.256114
Target:  5'- --gUCAUC-CCgGCGuuGCGCAGGCUGa -3'
miRNA:   3'- auuGGUGGcGG-CGCggCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 44665 0.67 0.295321
Target:  5'- --cCCGCUGCUGCgGCgGCGCGauGCCGa -3'
miRNA:   3'- auuGGUGGCGGCG-CGgCGCGUc-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 33111 0.67 0.26234
Target:  5'- gGACaCGCCGCCcuUGCUGaCGguGGCCu -3'
miRNA:   3'- aUUG-GUGGCGGc-GCGGC-GCguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 11988 0.67 0.25859
Target:  5'- --uCCACCGCCaGCGCagcgaagguuuccggCGCGaucCGGGCCa -3'
miRNA:   3'- auuGGUGGCGG-CGCG---------------GCGC---GUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 1629 0.67 0.256114
Target:  5'- --cCCACCGgCGCGCgGCgGCcaacgcccgcgAGGCCa -3'
miRNA:   3'- auuGGUGGCgGCGCGgCG-CG-----------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 43337 0.67 0.274507
Target:  5'- gUGACCguGCCGucgggguugaucaCCGCGCCGgGCAccuuGCCGg -3'
miRNA:   3'- -AUUGG--UGGC-------------GGCGCGGCgCGUc---CGGC- -5'
19109 5' -64.3 NC_004684.1 + 23905 0.67 0.275159
Target:  5'- -uGCUGCCGCUGCGcCCGCcGCAccugcuGCCGc -3'
miRNA:   3'- auUGGUGGCGGCGC-GGCG-CGUc-----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 53410 0.67 0.275159
Target:  5'- gUGGCCggGCUgGCCuGCGCCGCGCGacuGCCa -3'
miRNA:   3'- -AUUGG--UGG-CGG-CGCGGCGCGUc--CGGc -5'
19109 5' -64.3 NC_004684.1 + 57049 0.67 0.281755
Target:  5'- gGGCCACgGCaccaGCGCgGUGgCAGGCa- -3'
miRNA:   3'- aUUGGUGgCGg---CGCGgCGC-GUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 63490 0.67 0.288475
Target:  5'- aGGCCuCCaGCUGCGCCuGCGCcagcAGGgCGg -3'
miRNA:   3'- aUUGGuGG-CGGCGCGG-CGCG----UCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 22194 0.67 0.295321
Target:  5'- -cGCUGCCGCUggaGCGCgGCgggguGguGGCCGa -3'
miRNA:   3'- auUGGUGGCGG---CGCGgCG-----CguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 673 0.67 0.295321
Target:  5'- aGACCGucaccgaguUCGCCGCGCaGCGCAagaccGCCGc -3'
miRNA:   3'- aUUGGU---------GGCGGCGCGgCGCGUc----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 60543 0.67 0.295321
Target:  5'- -cACCACCaCgGCGUCGCccuucgcgccGUAGGCCa -3'
miRNA:   3'- auUGGUGGcGgCGCGGCG----------CGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 28477 0.67 0.294631
Target:  5'- -cGCCGCCGaCUGCGCCaaaccugagaccuGCGUGGacauGCCGg -3'
miRNA:   3'- auUGGUGGC-GGCGCGG-------------CGCGUC----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 29447 0.67 0.288475
Target:  5'- aUGGCCuCCaCCGCGUCGaGCAGGgCGu -3'
miRNA:   3'- -AUUGGuGGcGGCGCGGCgCGUCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 40699 0.67 0.295321
Target:  5'- gAACUucaGCUGgGCgGCGguGGCCGg -3'
miRNA:   3'- aUUGGuggCGGCgCGgCGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 41551 0.67 0.288475
Target:  5'- aGGCCgccgagcaucugGCCGCCGaUGCCGUuCuGGCCGc -3'
miRNA:   3'- aUUGG------------UGGCGGC-GCGGCGcGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 51171 0.67 0.295321
Target:  5'- gUGGCCGaugCGCCGgGCCauggaccgcGCGCccuGGCCGu -3'
miRNA:   3'- -AUUGGUg--GCGGCgCGG---------CGCGu--CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 6220 0.67 0.26234
Target:  5'- cAACC-CCGCCGaccugGCCG-GguGGCUGa -3'
miRNA:   3'- aUUGGuGGCGGCg----CGGCgCguCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.