miRNA display CGI


Results 101 - 120 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 51171 0.67 0.295321
Target:  5'- gUGGCCGaugCGCCGgGCCauggaccgcGCGCccuGGCCGu -3'
miRNA:   3'- -AUUGGUg--GCGGCgCGG---------CGCGu--CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 42863 0.67 0.295321
Target:  5'- cGGCaCACCGCCGUagauggcaccGCCGaaCGCGcGGCCc -3'
miRNA:   3'- aUUG-GUGGCGGCG----------CGGC--GCGU-CCGGc -5'
19109 5' -64.3 NC_004684.1 + 60980 0.67 0.281755
Target:  5'- -cGCCGCCGCCGaGCUGUaCAccucGGCCa -3'
miRNA:   3'- auUGGUGGCGGCgCGGCGcGU----CCGGc -5'
19109 5' -64.3 NC_004684.1 + 41551 0.67 0.288475
Target:  5'- aGGCCgccgagcaucugGCCGCCGaUGCCGUuCuGGCCGc -3'
miRNA:   3'- aUUGG------------UGGCGGC-GCGGCGcGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 23905 0.67 0.275159
Target:  5'- -uGCUGCCGCUGCGcCCGCcGCAccugcuGCCGc -3'
miRNA:   3'- auUGGUGGCGGCGC-GGCG-CGUc-----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 11988 0.67 0.25859
Target:  5'- --uCCACCGCCaGCGCagcgaagguuuccggCGCGaucCGGGCCa -3'
miRNA:   3'- auuGGUGGCGG-CGCG---------------GCGC---GUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 42733 0.67 0.256114
Target:  5'- -cACCGCCGUCgGCGaaGUGCAGugcgcGCCGg -3'
miRNA:   3'- auUGGUGGCGG-CGCggCGCGUC-----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 65250 0.67 0.256114
Target:  5'- --uUCACCGaCGCGCCGaacgcaCGCAGGUCc -3'
miRNA:   3'- auuGGUGGCgGCGCGGC------GCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 43853 0.67 0.295321
Target:  5'- cGACCgauGCCGCCGagGuuGgugaGCAGGCUGg -3'
miRNA:   3'- aUUGG---UGGCGGCg-CggCg---CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 37868 0.67 0.295321
Target:  5'- cAACCACCGaCCa----GCGCAGGCCu -3'
miRNA:   3'- aUUGGUGGC-GGcgcggCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 31770 0.67 0.295321
Target:  5'- -cACCACgCGCggaaaguaGUGCCGCGCAaGGUCc -3'
miRNA:   3'- auUGGUG-GCGg-------CGCGGCGCGU-CCGGc -5'
19109 5' -64.3 NC_004684.1 + 25410 0.67 0.295321
Target:  5'- cGGCCACCGCgCGgGCauagaacgccuUGCGguccucCAGGCCGu -3'
miRNA:   3'- aUUGGUGGCG-GCgCG-----------GCGC------GUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 22194 0.67 0.295321
Target:  5'- -cGCUGCCGCUggaGCGCgGCgggguGguGGCCGa -3'
miRNA:   3'- auUGGUGGCGG---CGCGgCG-----CguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 673 0.67 0.295321
Target:  5'- aGACCGucaccgaguUCGCCGCGCaGCGCAagaccGCCGc -3'
miRNA:   3'- aUUGGU---------GGCGGCGCGgCGCGUc----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 23944 0.67 0.284428
Target:  5'- -uGCUGCCGCCcCGCCGCaccgaccucggccucGCcGGGCCu -3'
miRNA:   3'- auUGGUGGCGGcGCGGCG---------------CG-UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 60543 0.67 0.295321
Target:  5'- -cACCACCaCgGCGUCGCccuucgcgccGUAGGCCa -3'
miRNA:   3'- auUGGUGGcGgCGCGGCG----------CGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 27021 0.67 0.295321
Target:  5'- -cGCCACCGCCGagGCC-CccaAGGCCa -3'
miRNA:   3'- auUGGUGGCGGCg-CGGcGcg-UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 34252 0.68 0.244027
Target:  5'- cGGCaACUGCCuGUGgaCUGCGCAGGCCa -3'
miRNA:   3'- aUUGgUGGCGG-CGC--GGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 7730 0.68 0.25001
Target:  5'- gAGCCACCugaucgguaucGCCGCGCCGCuGUcGuCCGa -3'
miRNA:   3'- aUUGGUGG-----------CGGCGCGGCG-CGuCcGGC- -5'
19109 5' -64.3 NC_004684.1 + 40660 0.68 0.25001
Target:  5'- cUGGCC-CCGCCa-GUCGCGCucGGCCa -3'
miRNA:   3'- -AUUGGuGGCGGcgCGGCGCGu-CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.