miRNA display CGI


Results 41 - 60 of 326 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 4440 0.74 0.08025
Target:  5'- -cGCCACCaucgucgGCgCGCGCCGCGCGcuGGUCGg -3'
miRNA:   3'- auUGGUGG-------CG-GCGCGGCGCGU--CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 9012 0.74 0.089565
Target:  5'- --uCCACgCGCgGUGCCGUGCGGGgCGg -3'
miRNA:   3'- auuGGUG-GCGgCGCGGCGCGUCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 15812 0.74 0.080466
Target:  5'- gGACCACCcgGUCGcCGCCGCGCAGcGCg- -3'
miRNA:   3'- aUUGGUGG--CGGC-GCGGCGCGUC-CGgc -5'
19109 5' -64.3 NC_004684.1 + 40068 0.74 0.091989
Target:  5'- -uACCGCCGUCGUcaaagcugGCCGCaccgaGCAGGCCa -3'
miRNA:   3'- auUGGUGGCGGCG--------CGGCG-----CGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 39511 0.74 0.081992
Target:  5'- uUGGCCaugcacgggauaauACCGCCGUG-CGUGCAGGCCu -3'
miRNA:   3'- -AUUGG--------------UGGCGGCGCgGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 38095 0.73 0.105066
Target:  5'- aAACCACCGCCGUcggaguucGCgGUGCcggagcaaguggAGGCCGa -3'
miRNA:   3'- aUUGGUGGCGGCG--------CGgCGCG------------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 7236 0.73 0.096766
Target:  5'- -uGCCACCGCCGagcaaauccgcuaCGCCaccgaGCAGGCCGc -3'
miRNA:   3'- auUGGUGGCGGC-------------GCGGcg---CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 36226 0.73 0.105066
Target:  5'- gUGGCCACCGCCGaGaCCGCugGCGuGGCCa -3'
miRNA:   3'- -AUUGGUGGCGGCgC-GGCG--CGU-CCGGc -5'
19109 5' -64.3 NC_004684.1 + 16588 0.73 0.105066
Target:  5'- -uACCGCCGCCaGCGuCUGCuGguGGCCu -3'
miRNA:   3'- auUGGUGGCGG-CGC-GGCG-CguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 5938 0.73 0.106184
Target:  5'- cUGGCCACCgggcgguccaaccugGCCGCGCCGgugaGCGaccGGCCGa -3'
miRNA:   3'- -AUUGGUGG---------------CGGCGCGGCg---CGU---CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 63584 0.73 0.107883
Target:  5'- cGGCCugCGCgGCGCgGCGguGGUUa -3'
miRNA:   3'- aUUGGugGCGgCGCGgCGCguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 20352 0.73 0.110771
Target:  5'- gGugCACCGUCa--CCGCGCAGGCCa -3'
miRNA:   3'- aUugGUGGCGGcgcGGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 55102 0.73 0.105066
Target:  5'- --uCCACCGUuggCGCGCUGCGCagcacGGGCCu -3'
miRNA:   3'- auuGGUGGCG---GCGCGGCGCG-----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 61314 0.73 0.102318
Target:  5'- -cACCGCCGCCGgGCCGCcGCccucGGCgGc -3'
miRNA:   3'- auUGGUGGCGGCgCGGCG-CGu---CCGgC- -5'
19109 5' -64.3 NC_004684.1 + 41999 0.73 0.102318
Target:  5'- cUGGCCGCCGCUGUgcgcgGCgGCGUAGGCg- -3'
miRNA:   3'- -AUUGGUGGCGGCG-----CGgCGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 26691 0.73 0.104788
Target:  5'- cGGCCACCGCCGCccagcugaaguucGUCGCcaccuuGCuGGCCGa -3'
miRNA:   3'- aUUGGUGGCGGCG-------------CGGCG------CGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 61383 0.73 0.099637
Target:  5'- aGGCCACCGCguccgauggUGCGCCugaGC-CAGGCCGg -3'
miRNA:   3'- aUUGGUGGCG---------GCGCGG---CGcGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 65322 0.73 0.099637
Target:  5'- -cACCACgGCCaGCGCCaG-GCAGGCCa -3'
miRNA:   3'- auUGGUGgCGG-CGCGG-CgCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 61475 0.73 0.099637
Target:  5'- -uGCCACCuaGUCGauguCGCCGCGCAGGCgGc -3'
miRNA:   3'- auUGGUGG--CGGC----GCGGCGCGUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 10313 0.73 0.102318
Target:  5'- ---gCACCGaugugCGCGCCGCaacGCAGGCCGc -3'
miRNA:   3'- auugGUGGCg----GCGCGGCG---CGUCCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.