miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 394 0.73 0.107883
Target:  5'- gGAUCACCGCCGUGgCGgGCAaGCUGg -3'
miRNA:   3'- aUUGGUGGCGGCGCgGCgCGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 41999 0.73 0.102318
Target:  5'- cUGGCCGCCGCUGUgcgcgGCgGCGUAGGCg- -3'
miRNA:   3'- -AUUGGUGGCGGCG-----CGgCGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 47713 0.73 0.105066
Target:  5'- aGGCCuuGCCGCCGCGCCG-GUAGaGCgCGu -3'
miRNA:   3'- aUUGG--UGGCGGCGCGGCgCGUC-CG-GC- -5'
19109 5' -64.3 NC_004684.1 + 63157 0.73 0.105066
Target:  5'- cGGCUcCUG-CGCGCCGCGCAGGCg- -3'
miRNA:   3'- aUUGGuGGCgGCGCGGCGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 51462 0.72 0.119876
Target:  5'- aGGCC-CCGCCaggcuccgGUGCCGgGUAGGCCu -3'
miRNA:   3'- aUUGGuGGCGG--------CGCGGCgCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 55553 0.72 0.129673
Target:  5'- -cGCCgcugGCCGCCGUgGCC-CGguGGCCGg -3'
miRNA:   3'- auUGG----UGGCGGCG-CGGcGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 55948 0.72 0.129673
Target:  5'- aGGCCGaCGCCGaCGCCGCGCuccagcGGGUCa -3'
miRNA:   3'- aUUGGUgGCGGC-GCGGCGCG------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 2955 0.72 0.129334
Target:  5'- aGGCCAUCGgCGCGCUGCuguugcgGguGGCCa -3'
miRNA:   3'- aUUGGUGGCgGCGCGGCG-------CguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 48438 0.72 0.119876
Target:  5'- --uCCACCGCCuuGCCGaccuCGguGGCCGa -3'
miRNA:   3'- auuGGUGGCGGcgCGGC----GCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 65765 0.72 0.116766
Target:  5'- uUGGCCGCCG-CGCGCCG-GUGGGCgCGc -3'
miRNA:   3'- -AUUGGUGGCgGCGCGGCgCGUCCG-GC- -5'
19109 5' -64.3 NC_004684.1 + 55300 0.72 0.124359
Target:  5'- gUGAUgGCCGCCGCGCgggccagcaccucguCGCGCucggcGGCCa -3'
miRNA:   3'- -AUUGgUGGCGGCGCG---------------GCGCGu----CCGGc -5'
19109 5' -64.3 NC_004684.1 + 20798 0.72 0.126327
Target:  5'- aAACCGCCGCCGuCGCCGcCGUcGaGCgCGa -3'
miRNA:   3'- aUUGGUGGCGGC-GCGGC-GCGuC-CG-GC- -5'
19109 5' -64.3 NC_004684.1 + 47186 0.72 0.116766
Target:  5'- gGGCCGCCGCUGCGCgGCGaacGGUgCGg -3'
miRNA:   3'- aUUGGUGGCGGCGCGgCGCgu-CCG-GC- -5'
19109 5' -64.3 NC_004684.1 + 242 0.72 0.113732
Target:  5'- -cAUCGCCGCCaCGaucauCGUGCAGGCCGa -3'
miRNA:   3'- auUGGUGGCGGcGCg----GCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 3865 0.72 0.113732
Target:  5'- aGGCaCGCCGCUGCGCaGUGCcaAGGCCu -3'
miRNA:   3'- aUUG-GUGGCGGCGCGgCGCG--UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 65136 0.72 0.123062
Target:  5'- --cCCGCCGCCGCGCUGaucaGCGuGGCg- -3'
miRNA:   3'- auuGGUGGCGGCGCGGCg---CGU-CCGgc -5'
19109 5' -64.3 NC_004684.1 + 63207 0.72 0.119876
Target:  5'- gAACCACCGCgCcCGCCGgGCgcaaccGGGCCa -3'
miRNA:   3'- aUUGGUGGCG-GcGCGGCgCG------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 59804 0.72 0.121778
Target:  5'- cGACCACCggguuGCCGCGCaccagccgcaccaGCGCcacccgGGGCCGg -3'
miRNA:   3'- aUUGGUGG-----CGGCGCGg------------CGCG------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 29864 0.72 0.113732
Target:  5'- -cAUCGCCGCCGCaGUCGUGCAucaGGUCGu -3'
miRNA:   3'- auUGGUGGCGGCG-CGGCGCGU---CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 19439 0.72 0.133099
Target:  5'- aAACCACCGugcgcccaugcCCGgGCgGCGguGGCCc -3'
miRNA:   3'- aUUGGUGGC-----------GGCgCGgCGCguCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.