miRNA display CGI


Results 101 - 120 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 2996 0.7 0.167883
Target:  5'- aGGCCAUCaCCGCGCCGUGCacacaGGuGCUGa -3'
miRNA:   3'- aUUGGUGGcGGCGCGGCGCG-----UC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 21271 0.7 0.167883
Target:  5'- cAACCACC-CCG-GCaCGCGCGcccGGCCGu -3'
miRNA:   3'- aUUGGUGGcGGCgCG-GCGCGU---CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 61687 0.7 0.163648
Target:  5'- -cGCCAUuggCGUCgGUGCCGUggGCAGGCCGg -3'
miRNA:   3'- auUGGUG---GCGG-CGCGGCG--CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 19329 0.7 0.163648
Target:  5'- -cGCCGCCGCCGUgGCCGaGCGGGaggCGc -3'
miRNA:   3'- auUGGUGGCGGCG-CGGCgCGUCCg--GC- -5'
19109 5' -64.3 NC_004684.1 + 26410 0.7 0.163648
Target:  5'- -cGCCACCGgCGCGCUG-GCAGcgggguucgccGCCGg -3'
miRNA:   3'- auUGGUGGCgGCGCGGCgCGUC-----------CGGC- -5'
19109 5' -64.3 NC_004684.1 + 65849 0.7 0.163648
Target:  5'- gGugCACCGCaUGCGa-GCGCGGGUCGc -3'
miRNA:   3'- aUugGUGGCG-GCGCggCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 65879 0.7 0.159509
Target:  5'- --gUCGCCGUugagCGCGgCGCGCAGGuuGg -3'
miRNA:   3'- auuGGUGGCG----GCGCgGCGCGUCCggC- -5'
19109 5' -64.3 NC_004684.1 + 53183 0.7 0.176647
Target:  5'- gGACagGCCGaCCGCGCCGCu--GGCCa -3'
miRNA:   3'- aUUGg-UGGC-GGCGCGGCGcguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 12833 0.7 0.181181
Target:  5'- cGGCUcuGCUGCCGacgugGUCGCGgAGGCCGa -3'
miRNA:   3'- aUUGG--UGGCGGCg----CGGCGCgUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 41335 0.7 0.159509
Target:  5'- -cGCgACCGCCGacgGCCGgGCcaAGGCCa -3'
miRNA:   3'- auUGgUGGCGGCg--CGGCgCG--UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 25390 0.7 0.159509
Target:  5'- ---aCGCCGCCGCGCacaGCGgC-GGCCa -3'
miRNA:   3'- auugGUGGCGGCGCGg--CGC-GuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 731 0.7 0.163648
Target:  5'- -cACCGCCGgugaCCGgGCCGcCGCcgAGGCCa -3'
miRNA:   3'- auUGGUGGC----GGCgCGGC-GCG--UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 61113 0.7 0.159509
Target:  5'- cGGCUACaguuCGCCGCGCuCGUGCAuccGGCCc -3'
miRNA:   3'- aUUGGUG----GCGGCGCG-GCGCGU---CCGGc -5'
19109 5' -64.3 NC_004684.1 + 39601 0.7 0.163648
Target:  5'- gGACCgaACCGCCGCGCaC-CGuCGGGCgGg -3'
miRNA:   3'- aUUGG--UGGCGGCGCG-GcGC-GUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 14295 0.7 0.163648
Target:  5'- gUGGCCuugcagGCCGCCGCGCagGUGUAcGCCGg -3'
miRNA:   3'- -AUUGG------UGGCGGCGCGg-CGCGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 18823 0.7 0.159509
Target:  5'- --uCCAUCGUCaagcuCGgCGCGCAGGCCGa -3'
miRNA:   3'- auuGGUGGCGGc----GCgGCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 43923 0.7 0.163648
Target:  5'- -cACCACCGCCGUcacgcuGUCGgGCauggAGGCCa -3'
miRNA:   3'- auUGGUGGCGGCG------CGGCgCG----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 7913 0.7 0.159509
Target:  5'- ----gGCCGCUG-GCCGCGCAGGUgGu -3'
miRNA:   3'- auuggUGGCGGCgCGGCGCGUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 66172 0.7 0.163648
Target:  5'- aGGCCGCCgagGCCGacgaagucgaCGCCGCGCuuGCCGu -3'
miRNA:   3'- aUUGGUGG---CGGC----------GCGGCGCGucCGGC- -5'
19109 5' -64.3 NC_004684.1 + 36239 0.7 0.159509
Target:  5'- -cACCGCCGCCGgGuuGgugaGCAGGuuGu -3'
miRNA:   3'- auUGGUGGCGGCgCggCg---CGUCCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.