miRNA display CGI


Results 1 - 20 of 326 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 3805 1.06 0.000262
Target:  5'- gUAACCACCGCCGCGCCGCGCAGGCCGa -3'
miRNA:   3'- -AUUGGUGGCGGCGCGGCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 20192 0.8 0.02924
Target:  5'- -uACCACCGCCGCaccguucGCCGCGCAgcggcggcccuGGCCGc -3'
miRNA:   3'- auUGGUGGCGGCG-------CGGCGCGU-----------CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 26662 0.8 0.030983
Target:  5'- -cGCCACCGCCccCGCCGCGCuGGUCGu -3'
miRNA:   3'- auUGGUGGCGGc-GCGGCGCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 46085 0.8 0.032739
Target:  5'- gGACCACCGCCucgccuGCGuuGCGCAgauacGGCCGg -3'
miRNA:   3'- aUUGGUGGCGG------CGCggCGCGU-----CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 62291 0.79 0.033653
Target:  5'- cAGgCGCUGCUccaGCGCCGCGCGGGCCu -3'
miRNA:   3'- aUUgGUGGCGG---CGCGGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 61013 0.79 0.037567
Target:  5'- -cGCCAacaCGCUGCGCaaCGCGCAGGCCa -3'
miRNA:   3'- auUGGUg--GCGGCGCG--GCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 26516 0.79 0.038613
Target:  5'- cUGACCACCGCugaCGUGUCGCGCcugggcggucAGGCCGg -3'
miRNA:   3'- -AUUGGUGGCG---GCGCGGCGCG----------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 54625 0.79 0.038613
Target:  5'- uUGGCCGCaGgCGCaGCCGCGCGGGCCa -3'
miRNA:   3'- -AUUGGUGgCgGCG-CGGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 25696 0.78 0.040792
Target:  5'- gAACCGCaCGCCGuCGCCGCGCuggguguugccgAGGUCGg -3'
miRNA:   3'- aUUGGUG-GCGGC-GCGGCGCG------------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 24907 0.78 0.041926
Target:  5'- aUGGCCGCCGCCGCGaucagCGCGCuGGgCGg -3'
miRNA:   3'- -AUUGGUGGCGGCGCg----GCGCGuCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 13968 0.78 0.044288
Target:  5'- cUGACgGCaGUCGCGCgGCGCAGGCCa -3'
miRNA:   3'- -AUUGgUGgCGGCGCGgCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 44950 0.78 0.045517
Target:  5'- gGAUCGCCGCCGCGCCgacggcgaugGCGUugAGGCCc -3'
miRNA:   3'- aUUGGUGGCGGCGCGG----------CGCG--UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 42395 0.78 0.046779
Target:  5'- cGGCC-CCGCCgaccccaacGCGCCGaCGCGGGCCa -3'
miRNA:   3'- aUUGGuGGCGG---------CGCGGC-GCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 33907 0.78 0.046779
Target:  5'- gGGCCGCCGCCGCGUCcacCGCAGccccGCCGa -3'
miRNA:   3'- aUUGGUGGCGGCGCGGc--GCGUC----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 60590 0.78 0.046779
Target:  5'- --uCCA-CGCCGCGCacgguGCGCAGGCCGg -3'
miRNA:   3'- auuGGUgGCGGCGCGg----CGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 10241 0.77 0.049949
Target:  5'- cGGCCACCGCCGCcauggaggcgaaccaGCCGCGcCAGuGCUGc -3'
miRNA:   3'- aUUGGUGGCGGCG---------------CGGCGC-GUC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 48764 0.77 0.050774
Target:  5'- -cGCCACgcuggacuUGCCGaCGCCGgGCGGGCCGa -3'
miRNA:   3'- auUGGUG--------GCGGC-GCGGCgCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 857 0.77 0.050774
Target:  5'- -cGCCuACCGCCGUGCC-CGCcGGGCCGc -3'
miRNA:   3'- auUGG-UGGCGGCGCGGcGCG-UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 9863 0.77 0.052178
Target:  5'- gAGCUGCCGCCGgaucccgaCGCCGCGCaggagcAGGCCGc -3'
miRNA:   3'- aUUGGUGGCGGC--------GCGGCGCG------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 12880 0.77 0.053473
Target:  5'- aGGCCGCCGCCGgggagccugcgcuCGCCGCcaGCGGuGCCGg -3'
miRNA:   3'- aUUGGUGGCGGC-------------GCGGCG--CGUC-CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.