miRNA display CGI


Results 81 - 100 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 40394 0.72 0.133099
Target:  5'- uUGAUCGCCGCgCcCGCCGCGCucgcaccGGCCu -3'
miRNA:   3'- -AUUGGUGGCG-GcGCGGCGCGu------CCGGc -5'
19109 5' -64.3 NC_004684.1 + 19439 0.72 0.133099
Target:  5'- aAACCACCGugcgcccaugcCCGgGCgGCGguGGCCc -3'
miRNA:   3'- aUUGGUGGC-----------GGCgCGgCGCguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 54428 0.72 0.133099
Target:  5'- -uGCCuGCCGCCGCGUCG-GCGGGagcaCCGg -3'
miRNA:   3'- auUGG-UGGCGGCGCGGCgCGUCC----GGC- -5'
19109 5' -64.3 NC_004684.1 + 51622 0.72 0.133099
Target:  5'- --gUCGCCGCCGCgauaggugccGCUGCGCAgcugcuGGCCGu -3'
miRNA:   3'- auuGGUGGCGGCG----------CGGCGCGU------CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 24721 0.72 0.133099
Target:  5'- uUGGCCACCGCCGUGaugcccuccaCCGCGCucaucGCUGg -3'
miRNA:   3'- -AUUGGUGGCGGCGC----------GGCGCGuc---CGGC- -5'
19109 5' -64.3 NC_004684.1 + 9874 0.71 0.136609
Target:  5'- gGGCCACCGCCuCGggauCCgGCGCAGGCa- -3'
miRNA:   3'- aUUGGUGGCGGcGC----GG-CGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 2448 0.71 0.136609
Target:  5'- gGGCCACCGCC-CGCCagGCGCucaccGCCGc -3'
miRNA:   3'- aUUGGUGGCGGcGCGG--CGCGuc---CGGC- -5'
19109 5' -64.3 NC_004684.1 + 10111 0.71 0.140204
Target:  5'- -uGCgGCuCGCCGUcacaggccgaGCUGUGCGGGCCGa -3'
miRNA:   3'- auUGgUG-GCGGCG----------CGGCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 36760 0.71 0.140204
Target:  5'- ---aCGCCGCCaGgGCCGCGCccGGuGCCGa -3'
miRNA:   3'- auugGUGGCGG-CgCGGCGCG--UC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 52315 0.71 0.143886
Target:  5'- -cGCgCGCaGCUGCGCggUGCGCAGGCCa -3'
miRNA:   3'- auUG-GUGgCGGCGCG--GCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 41396 0.71 0.143886
Target:  5'- cGGCCGCCGCCaggaGCGCCa-GCGGGuuGc -3'
miRNA:   3'- aUUGGUGGCGG----CGCGGcgCGUCCggC- -5'
19109 5' -64.3 NC_004684.1 + 41014 0.71 0.143886
Target:  5'- aGAUCGCCGCCGaCGuuGC-CGGuGCCGu -3'
miRNA:   3'- aUUGGUGGCGGC-GCggCGcGUC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 65285 0.71 0.147655
Target:  5'- cGACCA-CGCCGCGCCGUaguGCuGcGCCa -3'
miRNA:   3'- aUUGGUgGCGGCGCGGCG---CGuC-CGGc -5'
19109 5' -64.3 NC_004684.1 + 47265 0.71 0.151125
Target:  5'- gAACCgcacguucuugguGCCGCCGC-CCaGCGguGGCUGg -3'
miRNA:   3'- aUUGG-------------UGGCGGCGcGG-CGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 17107 0.71 0.151515
Target:  5'- --gUCGCCGUCGgGCCugGCGCuGGCCa -3'
miRNA:   3'- auuGGUGGCGGCgCGG--CGCGuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 52309 0.71 0.155466
Target:  5'- gGGCgGCCaCCGCGCCGauaAGGCCGu -3'
miRNA:   3'- aUUGgUGGcGGCGCGGCgcgUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 25390 0.7 0.159509
Target:  5'- ---aCGCCGCCGCGCacaGCGgC-GGCCa -3'
miRNA:   3'- auugGUGGCGGCGCGg--CGC-GuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 41335 0.7 0.159509
Target:  5'- -cGCgACCGCCGacgGCCGgGCcaAGGCCa -3'
miRNA:   3'- auUGgUGGCGGCg--CGGCgCG--UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 61113 0.7 0.159509
Target:  5'- cGGCUACaguuCGCCGCGCuCGUGCAuccGGCCc -3'
miRNA:   3'- aUUGGUG----GCGGCGCG-GCGCGU---CCGGc -5'
19109 5' -64.3 NC_004684.1 + 65879 0.7 0.159509
Target:  5'- --gUCGCCGUugagCGCGgCGCGCAGGuuGg -3'
miRNA:   3'- auuGGUGGCG----GCGCgGCGCGUCCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.