miRNA display CGI


Results 21 - 40 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 66496 0.66 0.330687
Target:  5'- cUGACCAggaUGuuGCGCgGCGCGgggaucacgugcuGGCCGu -3'
miRNA:   3'- -AUUGGUg--GCggCGCGgCGCGU-------------CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 48840 0.66 0.330687
Target:  5'- cGGCCGCCGUCGCGUCGUagucgauguugucGguGaccuuGCCGu -3'
miRNA:   3'- aUUGGUGGCGGCGCGGCG-------------CguC-----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 51802 0.66 0.323964
Target:  5'- gUAGCgCACCGagCGCGCCcccuucuCGCGGGUCa -3'
miRNA:   3'- -AUUG-GUGGCg-GCGCGGc------GCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 10895 0.66 0.323964
Target:  5'- gUGACCACCcggGUCG-GCgCGUaCAGGCCGa -3'
miRNA:   3'- -AUUGGUGG---CGGCgCG-GCGcGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 7129 0.66 0.323964
Target:  5'- -cGCCACCGCCGagguacacCCGgaaGguGGCCa -3'
miRNA:   3'- auUGGUGGCGGCgc------GGCg--CguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 63220 0.66 0.323964
Target:  5'- cGGCCACCGgCGgcucguUGCCGgGCGucGGCCc -3'
miRNA:   3'- aUUGGUGGCgGC------GCGGCgCGU--CCGGc -5'
19109 5' -64.3 NC_004684.1 + 66497 0.66 0.323964
Target:  5'- aGGCCuUgGCgGCgGCCuCGCGGGCCGc -3'
miRNA:   3'- aUUGGuGgCGgCG-CGGcGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 20794 0.66 0.323223
Target:  5'- aAGCCACCgGCaCGCaacgccaGCCGCGacgacuGGGCUGa -3'
miRNA:   3'- aUUGGUGG-CG-GCG-------CGGCGCg-----UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 64872 0.66 0.323223
Target:  5'- cAGCguCCGCaGUGCCGgGCgucguugAGGCCGc -3'
miRNA:   3'- aUUGguGGCGgCGCGGCgCG-------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 1280 0.66 0.316613
Target:  5'- gUGGCCAuguuCCGguaCGCGCgCGaCGCGuGGCCGg -3'
miRNA:   3'- -AUUGGU----GGCg--GCGCG-GC-GCGU-CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 6702 0.66 0.316613
Target:  5'- cUGGCCACCGUCgGCGCga-GCAaGCCGa -3'
miRNA:   3'- -AUUGGUGGCGG-CGCGgcgCGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 41139 0.66 0.316613
Target:  5'- cUGAUCAUccucugggguaCGCCGCGCCggacccgcGCGCGGGgUGg -3'
miRNA:   3'- -AUUGGUG-----------GCGGCGCGG--------CGCGUCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 25217 0.66 0.316613
Target:  5'- -uGCuCACCGCgcaGUGCgGCGCucucgacccauAGGCCGu -3'
miRNA:   3'- auUG-GUGGCGg--CGCGgCGCG-----------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 61154 0.66 0.316613
Target:  5'- -cAUCACCGUCGaaggccugGCCGCccaGCuGGCCGa -3'
miRNA:   3'- auUGGUGGCGGCg-------CGGCG---CGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 1087 0.66 0.316613
Target:  5'- -uACUACgCGCCGCuGCCGUcggGCAcccgcaacguGGCCGu -3'
miRNA:   3'- auUGGUG-GCGGCG-CGGCG---CGU----------CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 3513 0.66 0.316613
Target:  5'- ---gCACCGCUGgGCC-CGaugaAGGCCGc -3'
miRNA:   3'- auugGUGGCGGCgCGGcGCg---UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 46624 0.66 0.315886
Target:  5'- gGGCCACCGCCuccgguguggacgGCaCCGCcuGCGGuGCCu -3'
miRNA:   3'- aUUGGUGGCGG-------------CGcGGCG--CGUC-CGGc -5'
19109 5' -64.3 NC_004684.1 + 47569 0.66 0.314433
Target:  5'- -cGCCGCCGUcacaCGCGCUGaCgaacuccuuggccaGCAGGCCc -3'
miRNA:   3'- auUGGUGGCG----GCGCGGC-G--------------CGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 23428 0.66 0.30939
Target:  5'- --cCCGgUGCUGCGCa-CGguGGCCGa -3'
miRNA:   3'- auuGGUgGCGGCGCGgcGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 24182 0.66 0.30939
Target:  5'- -uGCCGCCGCCcaaaaugccgGUGCCuGCGguGcCCGa -3'
miRNA:   3'- auUGGUGGCGG----------CGCGG-CGCguCcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.