miRNA display CGI


Results 41 - 60 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 33828 0.66 0.30939
Target:  5'- cGACCACgggaUGUCGaCGCCGCGCcucaacaggacGGuGCCGu -3'
miRNA:   3'- aUUGGUG----GCGGC-GCGGCGCG-----------UC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 7501 0.66 0.30939
Target:  5'- cGugCGCCGCCGCaUCGgGguGGaCCu -3'
miRNA:   3'- aUugGUGGCGGCGcGGCgCguCC-GGc -5'
19109 5' -64.3 NC_004684.1 + 24182 0.66 0.30939
Target:  5'- -uGCCGCCGCCcaaaaugccgGUGCCuGCGguGcCCGa -3'
miRNA:   3'- auUGGUGGCGG----------CGCGG-CGCguCcGGC- -5'
19109 5' -64.3 NC_004684.1 + 23428 0.66 0.30939
Target:  5'- --cCCGgUGCUGCGCa-CGguGGCCGa -3'
miRNA:   3'- auuGGUgGCGGCGCGgcGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 42816 0.66 0.30939
Target:  5'- --cCCAacUCGCUG-GCCGCuCAGGCCGc -3'
miRNA:   3'- auuGGU--GGCGGCgCGGCGcGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 17376 0.66 0.302292
Target:  5'- -cGCUGCCGCCGaCGgUGCGCAcacccGGUCa -3'
miRNA:   3'- auUGGUGGCGGC-GCgGCGCGU-----CCGGc -5'
19109 5' -64.3 NC_004684.1 + 58088 0.66 0.302292
Target:  5'- cAGCUcgACCGggagCGCGCCGaGCAuGGCCGg -3'
miRNA:   3'- aUUGG--UGGCg---GCGCGGCgCGU-CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 8166 0.66 0.302292
Target:  5'- cAACCAgaUCGCCgGgGgCGCGCuGGGCCa -3'
miRNA:   3'- aUUGGU--GGCGG-CgCgGCGCG-UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 53348 0.66 0.302292
Target:  5'- -cGCCACCGCCuuGCUG-GuCGGGUCGc -3'
miRNA:   3'- auUGGUGGCGGcgCGGCgC-GUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 22232 0.66 0.302292
Target:  5'- cGACgGCaC-CCGCGCgaucaaCGCGCAGGCgCGa -3'
miRNA:   3'- aUUGgUG-GcGGCGCG------GCGCGUCCG-GC- -5'
19109 5' -64.3 NC_004684.1 + 4782 0.66 0.302292
Target:  5'- -cGCCAgcaagCGCCuCGgCGCGguGGCCGa -3'
miRNA:   3'- auUGGUg----GCGGcGCgGCGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 28365 0.66 0.302292
Target:  5'- ---aCACCGCCGaGCCGUagAGGUCGa -3'
miRNA:   3'- auugGUGGCGGCgCGGCGcgUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 47080 0.66 0.302292
Target:  5'- aUGGCCGCCGCCGCcaugguGUCGgCGCAcuucucGCUGg -3'
miRNA:   3'- -AUUGGUGGCGGCG------CGGC-GCGUc-----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 34642 0.66 0.302292
Target:  5'- -cGCCACCaggucgGCCGCGaCGUaccggucgauGUAGGCCGu -3'
miRNA:   3'- auUGGUGG------CGGCGCgGCG----------CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 673 0.67 0.295321
Target:  5'- aGACCGucaccgaguUCGCCGCGCaGCGCAagaccGCCGc -3'
miRNA:   3'- aUUGGU---------GGCGGCGCGgCGCGUc----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 40699 0.67 0.295321
Target:  5'- gAACUucaGCUGgGCgGCGguGGCCGg -3'
miRNA:   3'- aUUGGuggCGGCgCGgCGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 44665 0.67 0.295321
Target:  5'- --cCCGCUGCUGCgGCgGCGCGauGCCGa -3'
miRNA:   3'- auuGGUGGCGGCG-CGgCGCGUc-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 25410 0.67 0.295321
Target:  5'- cGGCCACCGCgCGgGCauagaacgccuUGCGguccucCAGGCCGu -3'
miRNA:   3'- aUUGGUGGCG-GCgCG-----------GCGC------GUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 42863 0.67 0.295321
Target:  5'- cGGCaCACCGCCGUagauggcaccGCCGaaCGCGcGGCCc -3'
miRNA:   3'- aUUG-GUGGCGGCG----------CGGC--GCGU-CCGGc -5'
19109 5' -64.3 NC_004684.1 + 60543 0.67 0.295321
Target:  5'- -cACCACCaCgGCGUCGCccuucgcgccGUAGGCCa -3'
miRNA:   3'- auUGGUGGcGgCGCGGCG----------CGUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.