miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 27021 0.67 0.295321
Target:  5'- -cGCCACCGCCGagGCC-CccaAGGCCa -3'
miRNA:   3'- auUGGUGGCGGCg-CGGcGcg-UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 673 0.67 0.295321
Target:  5'- aGACCGucaccgaguUCGCCGCGCaGCGCAagaccGCCGc -3'
miRNA:   3'- aUUGGU---------GGCGGCGCGgCGCGUc----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 60543 0.67 0.295321
Target:  5'- -cACCACCaCgGCGUCGCccuucgcgccGUAGGCCa -3'
miRNA:   3'- auUGGUGGcGgCGCGGCG----------CGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 44665 0.67 0.295321
Target:  5'- --cCCGCUGCUGCgGCgGCGCGauGCCGa -3'
miRNA:   3'- auuGGUGGCGGCG-CGgCGCGUc-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 58375 0.67 0.295321
Target:  5'- -uGCCGCC-CCGCacggcaCCGCGCguggAGGCCu -3'
miRNA:   3'- auUGGUGGcGGCGc-----GGCGCG----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 51171 0.67 0.295321
Target:  5'- gUGGCCGaugCGCCGgGCCauggaccgcGCGCccuGGCCGu -3'
miRNA:   3'- -AUUGGUg--GCGGCgCGG---------CGCGu--CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 40699 0.67 0.295321
Target:  5'- gAACUucaGCUGgGCgGCGguGGCCGg -3'
miRNA:   3'- aUUGGuggCGGCgCGgCGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 28477 0.67 0.294631
Target:  5'- -cGCCGCCGaCUGCGCCaaaccugagaccuGCGUGGacauGCCGg -3'
miRNA:   3'- auUGGUGGC-GGCGCGG-------------CGCGUC----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 41551 0.67 0.288475
Target:  5'- aGGCCgccgagcaucugGCCGCCGaUGCCGUuCuGGCCGc -3'
miRNA:   3'- aUUGG------------UGGCGGC-GCGGCGcGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 29447 0.67 0.288475
Target:  5'- aUGGCCuCCaCCGCGUCGaGCAGGgCGu -3'
miRNA:   3'- -AUUGGuGGcGGCGCGGCgCGUCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 63490 0.67 0.288475
Target:  5'- aGGCCuCCaGCUGCGCCuGCGCcagcAGGgCGg -3'
miRNA:   3'- aUUGGuGG-CGGCGCGG-CGCG----UCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 14333 0.67 0.288475
Target:  5'- aGACCACCGCUGaCaUCGCGUAcaacGCCGa -3'
miRNA:   3'- aUUGGUGGCGGC-GcGGCGCGUc---CGGC- -5'
19109 5' -64.3 NC_004684.1 + 19035 0.67 0.288475
Target:  5'- ---gCACCGgCG-GCCGgGCAGGUCa -3'
miRNA:   3'- auugGUGGCgGCgCGGCgCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 23944 0.67 0.284428
Target:  5'- -uGCUGCCGCCcCGCCGCaccgaccucggccucGCcGGGCCu -3'
miRNA:   3'- auUGGUGGCGGcGCGGCG---------------CG-UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 10186 0.67 0.281755
Target:  5'- cUGAgCACCaUCGCGCCGCcGCcuuccAGGCCc -3'
miRNA:   3'- -AUUgGUGGcGGCGCGGCG-CG-----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 51694 0.67 0.281755
Target:  5'- uUGACCAgCGCCggaccuuuaccgGUGCCGCcuucCAGGUCGu -3'
miRNA:   3'- -AUUGGUgGCGG------------CGCGGCGc---GUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 8743 0.67 0.281755
Target:  5'- --uUCGCCGCCGCGCC-CgGCGaGCUGa -3'
miRNA:   3'- auuGGUGGCGGCGCGGcG-CGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 57049 0.67 0.281755
Target:  5'- gGGCCACgGCaccaGCGCgGUGgCAGGCa- -3'
miRNA:   3'- aUUGGUGgCGg---CGCGgCGC-GUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 60980 0.67 0.281755
Target:  5'- -cGCCGCCGCCGaGCUGUaCAccucGGCCa -3'
miRNA:   3'- auUGGUGGCGGCgCGGCGcGU----CCGGc -5'
19109 5' -64.3 NC_004684.1 + 34721 0.67 0.281755
Target:  5'- aGGCCGuaGCCaugcCGCCGC-CAGGCCu -3'
miRNA:   3'- aUUGGUggCGGc---GCGGCGcGUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.