miRNA display CGI


Results 1 - 20 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 242 0.72 0.113732
Target:  5'- -cAUCGCCGCCaCGaucauCGUGCAGGCCGa -3'
miRNA:   3'- auUGGUGGCGGcGCg----GCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 394 0.73 0.107883
Target:  5'- gGAUCACCGCCGUGgCGgGCAaGCUGg -3'
miRNA:   3'- aUUGGUGGCGGCGCgGCgCGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 483 0.77 0.0551
Target:  5'- gUGGCCGCCaagGCCGCGCCGa--AGGCCGc -3'
miRNA:   3'- -AUUGGUGG---CGGCGCGGCgcgUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 521 0.69 0.200357
Target:  5'- -cGCCACCGgCGCugaCGUGCuGGCCa -3'
miRNA:   3'- auUGGUGGCgGCGcg-GCGCGuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 673 0.67 0.295321
Target:  5'- aGACCGucaccgaguUCGCCGCGCaGCGCAagaccGCCGc -3'
miRNA:   3'- aUUGGU---------GGCGGCGCGgCGCGUc----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 731 0.7 0.163648
Target:  5'- -cACCGCCGgugaCCGgGCCGcCGCcgAGGCCa -3'
miRNA:   3'- auUGGUGGC----GGCgCGGC-GCG--UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 857 0.77 0.050774
Target:  5'- -cGCCuACCGCCGUGCC-CGCcGGGCCGc -3'
miRNA:   3'- auUGG-UGGCGGCGCGGcGCG-UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 878 0.68 0.237583
Target:  5'- cGGCCAgcacgugauCC-CCGCGCCGCGCAacauccuGGUCa -3'
miRNA:   3'- aUUGGU---------GGcGGCGCGGCGCGU-------CCGGc -5'
19109 5' -64.3 NC_004684.1 + 1087 0.66 0.316613
Target:  5'- -uACUACgCGCCGCuGCCGUcggGCAcccgcaacguGGCCGu -3'
miRNA:   3'- auUGGUG-GCGGCG-CGGCG---CGU----------CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 1280 0.66 0.316613
Target:  5'- gUGGCCAuguuCCGguaCGCGCgCGaCGCGuGGCCGg -3'
miRNA:   3'- -AUUGGU----GGCg--GCGCG-GC-GCGU-CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 1393 0.66 0.33144
Target:  5'- aGGCCGCCGuuGCacugGCCaGCGaccuggAGGCCu -3'
miRNA:   3'- aUUGGUGGCggCG----CGG-CGCg-----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 1629 0.67 0.256114
Target:  5'- --cCCACCGgCGCGCgGCgGCcaacgcccgcgAGGCCa -3'
miRNA:   3'- auuGGUGGCgGCGCGgCG-CG-----------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 1851 0.68 0.220187
Target:  5'- gGACCAaCGCCGgGCCGCauauccaccuGGCCGa -3'
miRNA:   3'- aUUGGUgGCGGCgCGGCGcgu-------CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 1954 0.76 0.05818
Target:  5'- gUGGCCGCgCGCCGCacGCCaGCGCAGcGCCu -3'
miRNA:   3'- -AUUGGUG-GCGGCG--CGG-CGCGUC-CGGc -5'
19109 5' -64.3 NC_004684.1 + 2059 0.68 0.232417
Target:  5'- -cGCCAUCGUgGCcuGCCugGCGCuGGCCGu -3'
miRNA:   3'- auUGGUGGCGgCG--CGG--CGCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 2448 0.71 0.136609
Target:  5'- gGGCCACCGCC-CGCCagGCGCucaccGCCGc -3'
miRNA:   3'- aUUGGUGGCGGcGCGG--CGCGuc---CGGC- -5'
19109 5' -64.3 NC_004684.1 + 2955 0.72 0.129334
Target:  5'- aGGCCAUCGgCGCGCUGCuguugcgGguGGCCa -3'
miRNA:   3'- aUUGGUGGCgGCGCGGCG-------CguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 2996 0.7 0.167883
Target:  5'- aGGCCAUCaCCGCGCCGUGCacacaGGuGCUGa -3'
miRNA:   3'- aUUGGUGGcGGCGCGGCGCG-----UC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 3499 0.69 0.190557
Target:  5'- gUGGCCGCCaggacGCCGCaaucGCCGacggGUGGGCCGa -3'
miRNA:   3'- -AUUGGUGG-----CGGCG----CGGCg---CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 3513 0.66 0.316613
Target:  5'- ---gCACCGCUGgGCC-CGaugaAGGCCGc -3'
miRNA:   3'- auugGUGGCGGCgCGGcGCg---UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.