miRNA display CGI


Results 21 - 40 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 3700 0.74 0.082654
Target:  5'- aGAUCGCCaGCgC-CGCCGCGCuGGCCGg -3'
miRNA:   3'- aUUGGUGG-CG-GcGCGGCGCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 3805 1.06 0.000262
Target:  5'- gUAACCACCGCCGCGCCGCGCAGGCCGa -3'
miRNA:   3'- -AUUGGUGGCGGCGCGGCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 3865 0.72 0.113732
Target:  5'- aGGCaCGCCGCUGCGCaGUGCcaAGGCCu -3'
miRNA:   3'- aUUG-GUGGCGGCGCGgCGCG--UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 3886 0.67 0.268688
Target:  5'- -cGCCagGCCGCCcUGCUgGCGCAGGCg- -3'
miRNA:   3'- auUGG--UGGCGGcGCGG-CGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 4207 0.7 0.175307
Target:  5'- cUGAUCACCGCCagccacgacugcauGCGCCuGCGCGGcgcgcaggaGCCGc -3'
miRNA:   3'- -AUUGGUGGCGG--------------CGCGG-CGCGUC---------CGGC- -5'
19109 5' -64.3 NC_004684.1 + 4415 0.67 0.26234
Target:  5'- --uCCugGCCGCCG-GaacaaCGCGCGGGCCu -3'
miRNA:   3'- auuGG--UGGCGGCgCg----GCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 4440 0.74 0.08025
Target:  5'- -cGCCACCaucgucgGCgCGCGCCGCGCGcuGGUCGg -3'
miRNA:   3'- auUGGUGG-------CG-GCGCGGCGCGU--CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 4451 0.69 0.195404
Target:  5'- cAGCUggagGCCGCaCGUGCgCGCG-AGGCCGu -3'
miRNA:   3'- aUUGG----UGGCG-GCGCG-GCGCgUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 4782 0.66 0.302292
Target:  5'- -cGCCAgcaagCGCCuCGgCGCGguGGCCGa -3'
miRNA:   3'- auUGGUg----GCGGcGCgGCGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 5901 0.69 0.20542
Target:  5'- cGAgCGCCGCCGC-CUGCGC-GGCg- -3'
miRNA:   3'- aUUgGUGGCGGCGcGGCGCGuCCGgc -5'
19109 5' -64.3 NC_004684.1 + 5938 0.73 0.106184
Target:  5'- cUGGCCACCgggcgguccaaccugGCCGCGCCGgugaGCGaccGGCCGa -3'
miRNA:   3'- -AUUGGUGG---------------CGGCGCGGCg---CGU---CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 6025 0.69 0.20542
Target:  5'- gUGGCCuuuagGCCGCCaGCGCCuCGC-GGCCc -3'
miRNA:   3'- -AUUGG-----UGGCGG-CGCGGcGCGuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 6059 0.69 0.210593
Target:  5'- cUGACCAaccaCGCCGCGCUG-GUA-GCCGa -3'
miRNA:   3'- -AUUGGUg---GCGGCGCGGCgCGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 6220 0.67 0.26234
Target:  5'- cAACC-CCGCCGaccugGCCG-GguGGCUGa -3'
miRNA:   3'- aUUGGuGGCGGCg----CGGCgCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 6702 0.66 0.316613
Target:  5'- cUGGCCACCGUCgGCGCga-GCAaGCCGa -3'
miRNA:   3'- -AUUGGUGGCGG-CGCGgcgCGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 7129 0.66 0.323964
Target:  5'- -cGCCACCGCCGagguacacCCGgaaGguGGCCa -3'
miRNA:   3'- auUGGUGGCGGCgc------GGCg--CguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 7156 0.68 0.25001
Target:  5'- gUGACCGCCaCCGaacaGCCGCGCAcGGgaaCGu -3'
miRNA:   3'- -AUUGGUGGcGGCg---CGGCGCGU-CCg--GC- -5'
19109 5' -64.3 NC_004684.1 + 7236 0.73 0.096766
Target:  5'- -uGCCACCGCCGagcaaauccgcuaCGCCaccgaGCAGGCCGc -3'
miRNA:   3'- auUGGUGGCGGC-------------GCGGcg---CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 7320 0.76 0.066449
Target:  5'- aGGCCcgcacggGCCGCCGgGCCGCGCgccacgagugcgAGGCCu -3'
miRNA:   3'- aUUGG-------UGGCGGCgCGGCGCG------------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 7441 0.67 0.268688
Target:  5'- cGAgCGCCGCCaGCacaaCGCGCacgugGGGCCGg -3'
miRNA:   3'- aUUgGUGGCGG-CGcg--GCGCG-----UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.