miRNA display CGI


Results 41 - 60 of 326 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 7501 0.66 0.30939
Target:  5'- cGugCGCCGCCGCaUCGgGguGGaCCu -3'
miRNA:   3'- aUugGUGGCGGCGcGGCgCguCC-GGc -5'
19109 5' -64.3 NC_004684.1 + 7691 0.69 0.185817
Target:  5'- cAACCgggcauuccagGCCGUCGcCGUgGCGCuGGCCGu -3'
miRNA:   3'- aUUGG-----------UGGCGGC-GCGgCGCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 7730 0.68 0.25001
Target:  5'- gAGCCACCugaucgguaucGCCGCGCCGCuGUcGuCCGa -3'
miRNA:   3'- aUUGGUGG-----------CGGCGCGGCG-CGuCcGGC- -5'
19109 5' -64.3 NC_004684.1 + 7913 0.7 0.159509
Target:  5'- ----gGCCGCUG-GCCGCGCAGGUgGu -3'
miRNA:   3'- auuggUGGCGGCgCGGCGCGUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 8166 0.66 0.302292
Target:  5'- cAACCAgaUCGCCgGgGgCGCGCuGGGCCa -3'
miRNA:   3'- aUUGGU--GGCGG-CgCgGCGCG-UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 8523 0.69 0.195404
Target:  5'- ---aUugUGgCGUGCUGUGCGGGCCGg -3'
miRNA:   3'- auugGugGCgGCGCGGCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 8743 0.67 0.281755
Target:  5'- --uUCGCCGCCGCGCC-CgGCGaGCUGa -3'
miRNA:   3'- auuGGUGGCGGCGCGGcG-CGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 9012 0.74 0.089565
Target:  5'- --uCCACgCGCgGUGCCGUGCGGGgCGg -3'
miRNA:   3'- auuGGUG-GCGgCGCGGCGCGUCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 9549 0.68 0.220731
Target:  5'- -cGCCgguuggaGCCGgUGCGCCGCGaacacguGGCCGa -3'
miRNA:   3'- auUGG-------UGGCgGCGCGGCGCgu-----CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 9638 0.67 0.26234
Target:  5'- aGACCGCCuGaCCGCucaCUGCGCAGcuGCCGc -3'
miRNA:   3'- aUUGGUGG-C-GGCGc--GGCGCGUC--CGGC- -5'
19109 5' -64.3 NC_004684.1 + 9863 0.77 0.052178
Target:  5'- gAGCUGCCGCCGgaucccgaCGCCGCGCaggagcAGGCCGc -3'
miRNA:   3'- aUUGGUGGCGGC--------GCGGCGCG------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 9874 0.71 0.136609
Target:  5'- gGGCCACCGCCuCGggauCCgGCGCAGGCa- -3'
miRNA:   3'- aUUGGUGGCGGcGC----GG-CGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 10111 0.71 0.140204
Target:  5'- -uGCgGCuCGCCGUcacaggccgaGCUGUGCGGGCCGa -3'
miRNA:   3'- auUGgUG-GCGGCG----------CGGCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 10186 0.67 0.281755
Target:  5'- cUGAgCACCaUCGCGCCGCcGCcuuccAGGCCc -3'
miRNA:   3'- -AUUgGUGGcGGCGCGGCG-CG-----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 10241 0.77 0.049949
Target:  5'- cGGCCACCGCCGCcauggaggcgaaccaGCCGCGcCAGuGCUGc -3'
miRNA:   3'- aUUGGUGGCGGCG---------------CGGCGC-GUC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 10276 0.67 0.275159
Target:  5'- cUGGCCAgcgaCGCCgGUGUCGCGCcagAGGUCGc -3'
miRNA:   3'- -AUUGGUg---GCGG-CGCGGCGCG---UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 10313 0.73 0.102318
Target:  5'- ---gCACCGaugugCGCGCCGCaacGCAGGCCGc -3'
miRNA:   3'- auugGUGGCg----GCGCGGCG---CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 10618 0.68 0.226788
Target:  5'- -uGCCGuuGCCGUaugGgCGUGCuGGCCGa -3'
miRNA:   3'- auUGGUggCGGCG---CgGCGCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 10895 0.66 0.323964
Target:  5'- gUGACCACCcggGUCG-GCgCGUaCAGGCCGa -3'
miRNA:   3'- -AUUGGUGG---CGGCgCG-GCGcGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 11149 0.67 0.256114
Target:  5'- --gUCAUC-CCgGCGuuGCGCAGGCUGa -3'
miRNA:   3'- auuGGUGGcGG-CGCggCGCGUCCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.