miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 11225 0.75 0.070329
Target:  5'- -cGCCGCCGUCGuCGCCGuCGUcGGCCa -3'
miRNA:   3'- auUGGUGGCGGC-GCGGC-GCGuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 11727 0.69 0.210593
Target:  5'- cAGCaGCUGgUGCGCCGC-CAGGCCc -3'
miRNA:   3'- aUUGgUGGCgGCGCGGCGcGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 11960 0.66 0.33144
Target:  5'- aGACCACCGgCGCa-CGCGCuGGgUGg -3'
miRNA:   3'- aUUGGUGGCgGCGcgGCGCGuCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 11988 0.67 0.25859
Target:  5'- --uCCACCGCCaGCGCagcgaagguuuccggCGCGaucCGGGCCa -3'
miRNA:   3'- auuGGUGGCGG-CGCG---------------GCGC---GUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 12002 0.67 0.268047
Target:  5'- aUGACC-CCGCaggacuuCGCgGCgGCGguGGCCa -3'
miRNA:   3'- -AUUGGuGGCG-------GCG-CGgCGCguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 12068 0.69 0.199857
Target:  5'- cUGGCCGCCGagCGCGacgaggugcuggcCCGCGCGgcGGCCa -3'
miRNA:   3'- -AUUGGUGGCg-GCGC-------------GGCGCGU--CCGGc -5'
19109 5' -64.3 NC_004684.1 + 12206 0.66 0.33144
Target:  5'- -cGCCGCCGCCaGCGgUGCGUucuCCGg -3'
miRNA:   3'- auUGGUGGCGG-CGCgGCGCGuccGGC- -5'
19109 5' -64.3 NC_004684.1 + 12268 0.68 0.238162
Target:  5'- aUGACCAUCaucgaggcCCGUGCUGCGCAGcgcGCCa -3'
miRNA:   3'- -AUUGGUGGc-------GGCGCGGCGCGUC---CGGc -5'
19109 5' -64.3 NC_004684.1 + 12499 0.69 0.190557
Target:  5'- gGGCCGCCucguGCCGCacGuuGUGCAgGGCCa -3'
miRNA:   3'- aUUGGUGG----CGGCG--CggCGCGU-CCGGc -5'
19109 5' -64.3 NC_004684.1 + 12833 0.7 0.181181
Target:  5'- cGGCUcuGCUGCCGacgugGUCGCGgAGGCCGa -3'
miRNA:   3'- aUUGG--UGGCGGCg----CGGCGCgUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 12880 0.77 0.053473
Target:  5'- aGGCCGCCGCCGgggagccugcgcuCGCCGCcaGCGGuGCCGg -3'
miRNA:   3'- aUUGGUGGCGGC-------------GCGGCG--CGUC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 13055 0.76 0.05662
Target:  5'- --uCCACCGCCGCGCUGUGCuauGCCc -3'
miRNA:   3'- auuGGUGGCGGCGCGGCGCGuc-CGGc -5'
19109 5' -64.3 NC_004684.1 + 13262 0.7 0.176647
Target:  5'- gUGACCGCCaGCgCGCuggugGCCGcCGguGGCUGg -3'
miRNA:   3'- -AUUGGUGG-CG-GCG-----CGGC-GCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 13640 0.67 0.256114
Target:  5'- --uUCGCCGCCGCGCaccuGCGUGGuGUCu -3'
miRNA:   3'- auuGGUGGCGGCGCGg---CGCGUC-CGGc -5'
19109 5' -64.3 NC_004684.1 + 13968 0.78 0.044288
Target:  5'- cUGACgGCaGUCGCGCgGCGCAGGCCa -3'
miRNA:   3'- -AUUGgUGgCGGCGCGgCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 14295 0.7 0.163648
Target:  5'- gUGGCCuugcagGCCGCCGCGCagGUGUAcGCCGg -3'
miRNA:   3'- -AUUGG------UGGCGGCGCGg-CGCGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 14333 0.67 0.288475
Target:  5'- aGACCACCGCUGaCaUCGCGUAcaacGCCGa -3'
miRNA:   3'- aUUGGUGGCGGC-GcGGCGCGUc---CGGC- -5'
19109 5' -64.3 NC_004684.1 + 14345 0.67 0.268688
Target:  5'- -cACCACCGUgcuggGCaCCGCGCAGGUg- -3'
miRNA:   3'- auUGGUGGCGg----CGcGGCGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 14397 0.68 0.225677
Target:  5'- gGGCCGUCGCCGCaggagauGCUGCGCGaacugcuGGCCa -3'
miRNA:   3'- aUUGGUGGCGGCG-------CGGCGCGU-------CCGGc -5'
19109 5' -64.3 NC_004684.1 + 14482 0.69 0.210593
Target:  5'- cGGCCA-CGCC--GCCGUGCuGGCCGg -3'
miRNA:   3'- aUUGGUgGCGGcgCGGCGCGuCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.