miRNA display CGI


Results 81 - 100 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 14993 0.69 0.210593
Target:  5'- gAACCugCGCCuGCGCga-GCAGGUCa -3'
miRNA:   3'- aUUGGugGCGG-CGCGgcgCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 15167 0.69 0.192483
Target:  5'- -cGCCGCCGCCacgcaccugggacugGUGCUGCGCAgcGGCa- -3'
miRNA:   3'- auUGGUGGCGG---------------CGCGGCGCGU--CCGgc -5'
19109 5' -64.3 NC_004684.1 + 15242 0.66 0.342119
Target:  5'- cAGCUACgGCC-CGCCGCuGCcacgcaagacacuggAGGCCu -3'
miRNA:   3'- aUUGGUGgCGGcGCGGCG-CG---------------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 15812 0.74 0.080466
Target:  5'- gGACCACCcgGUCGcCGCCGCGCAGcGCg- -3'
miRNA:   3'- aUUGGUGG--CGGC-GCGGCGCGUC-CGgc -5'
19109 5' -64.3 NC_004684.1 + 16588 0.73 0.105066
Target:  5'- -uACCGCCGCCaGCGuCUGCuGguGGCCu -3'
miRNA:   3'- auUGGUGGCGG-CGC-GGCG-CguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 17040 0.68 0.232417
Target:  5'- ---aCGCCGCCGaUGCCGaUGCcaaggAGGCCGc -3'
miRNA:   3'- auugGUGGCGGC-GCGGC-GCG-----UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 17107 0.71 0.151515
Target:  5'- --gUCGCCGUCGgGCCugGCGCuGGCCa -3'
miRNA:   3'- auuGGUGGCGGCgCGG--CGCGuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 17376 0.66 0.302292
Target:  5'- -cGCUGCCGCCGaCGgUGCGCAcacccGGUCa -3'
miRNA:   3'- auUGGUGGCGGC-GCgGCGCGU-----CCGGc -5'
19109 5' -64.3 NC_004684.1 + 17500 0.66 0.339043
Target:  5'- cUGAUUACgcaGCUGCGCgaGCGCGGuGCCa -3'
miRNA:   3'- -AUUGGUGg--CGGCGCGg-CGCGUC-CGGc -5'
19109 5' -64.3 NC_004684.1 + 17856 0.68 0.243435
Target:  5'- cGGCCACCGCgCacacCGCCGgGUgcacgcuGGGCCGc -3'
miRNA:   3'- aUUGGUGGCG-Gc---GCGGCgCG-------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 18131 0.67 0.275159
Target:  5'- ---aCACCGCCaacauggacGCGCCGCuGUGGGgCGa -3'
miRNA:   3'- auugGUGGCGG---------CGCGGCG-CGUCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 18209 0.75 0.078332
Target:  5'- aGGCCGCCGCCGcCGCCGcCGCcgagacuGcGCCGu -3'
miRNA:   3'- aUUGGUGGCGGC-GCGGC-GCGu------C-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 18333 0.67 0.277782
Target:  5'- -cGCCGgUGCCGCccccggagccgaccgGCgGCGCGGuGCCGc -3'
miRNA:   3'- auUGGUgGCGGCG---------------CGgCGCGUC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 18437 0.69 0.184415
Target:  5'- cGGCCAccCCGCC-CGCCGaCGUgccguucggcgacgAGGCCGg -3'
miRNA:   3'- aUUGGU--GGCGGcGCGGC-GCG--------------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 18672 0.68 0.244027
Target:  5'- -cGCCACCGgCaaGCGCUG-GCAgGGCCGc -3'
miRNA:   3'- auUGGUGGCgG--CGCGGCgCGU-CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 18823 0.7 0.159509
Target:  5'- --uCCAUCGUCaagcuCGgCGCGCAGGCCGa -3'
miRNA:   3'- auuGGUGGCGGc----GCgGCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 19035 0.67 0.288475
Target:  5'- ---gCACCGgCG-GCCGgGCAGGUCa -3'
miRNA:   3'- auugGUGGCgGCgCGGCgCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 19329 0.7 0.163648
Target:  5'- -cGCCGCCGCCGUgGCCGaGCGGGaggCGc -3'
miRNA:   3'- auUGGUGGCGGCG-CGGCgCGUCCg--GC- -5'
19109 5' -64.3 NC_004684.1 + 19439 0.75 0.068455
Target:  5'- -cACCGCCaGCCGUGCCGaCGCcaccaAGGCCu -3'
miRNA:   3'- auUGGUGG-CGGCGCGGC-GCG-----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 19439 0.72 0.133099
Target:  5'- aAACCACCGugcgcccaugcCCGgGCgGCGguGGCCc -3'
miRNA:   3'- aUUGGUGGC-----------GGCgCGgCGCguCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.