miRNA display CGI


Results 1 - 20 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 66497 0.66 0.323964
Target:  5'- aGGCCuUgGCgGCgGCCuCGCGGGCCGc -3'
miRNA:   3'- aUUGGuGgCGgCG-CGGcGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 66496 0.66 0.330687
Target:  5'- cUGACCAggaUGuuGCGCgGCGCGgggaucacgugcuGGCCGu -3'
miRNA:   3'- -AUUGGUg--GCggCGCGgCGCGU-------------CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 66172 0.7 0.163648
Target:  5'- aGGCCGCCgagGCCGacgaagucgaCGCCGCGCuuGCCGu -3'
miRNA:   3'- aUUGGUGG---CGGC----------GCGGCGCGucCGGC- -5'
19109 5' -64.3 NC_004684.1 + 66127 0.7 0.176647
Target:  5'- aUGGCCACCaGCCaGCGCaucuGgGCcgGGGCCGg -3'
miRNA:   3'- -AUUGGUGG-CGG-CGCGg---CgCG--UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 65909 0.67 0.275159
Target:  5'- -cACCaggGCCGCCGCaCCGgGCAcguccGGCCc -3'
miRNA:   3'- auUGG---UGGCGGCGcGGCgCGU-----CCGGc -5'
19109 5' -64.3 NC_004684.1 + 65879 0.7 0.159509
Target:  5'- --gUCGCCGUugagCGCGgCGCGCAGGuuGg -3'
miRNA:   3'- auuGGUGGCG----GCGCgGCGCGUCCggC- -5'
19109 5' -64.3 NC_004684.1 + 65849 0.7 0.163648
Target:  5'- gGugCACCGCaUGCGa-GCGCGGGUCGc -3'
miRNA:   3'- aUugGUGGCG-GCGCggCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 65765 0.72 0.116766
Target:  5'- uUGGCCGCCG-CGCGCCG-GUGGGCgCGc -3'
miRNA:   3'- -AUUGGUGGCgGCGCGGCgCGUCCG-GC- -5'
19109 5' -64.3 NC_004684.1 + 65455 0.74 0.089088
Target:  5'- cGGCCACCG-UGCGCCGguaccaggcccgGCAGGCCGg -3'
miRNA:   3'- aUUGGUGGCgGCGCGGCg-----------CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 65420 0.66 0.33144
Target:  5'- --uUCGCgCGCCagGCGCUGCGCuGGCg- -3'
miRNA:   3'- auuGGUG-GCGG--CGCGGCGCGuCCGgc -5'
19109 5' -64.3 NC_004684.1 + 65322 0.73 0.099637
Target:  5'- -cACCACgGCCaGCGCCaG-GCAGGCCa -3'
miRNA:   3'- auUGGUGgCGG-CGCGG-CgCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 65285 0.71 0.147655
Target:  5'- cGACCA-CGCCGCGCCGUaguGCuGcGCCa -3'
miRNA:   3'- aUUGGUgGCGGCGCGGCG---CGuC-CGGc -5'
19109 5' -64.3 NC_004684.1 + 65250 0.67 0.256114
Target:  5'- --uUCACCGaCGCGCCGaacgcaCGCAGGUCc -3'
miRNA:   3'- auuGGUGGCgGCGCGGC------GCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 65136 0.72 0.123062
Target:  5'- --cCCGCCGCCGCGCUGaucaGCGuGGCg- -3'
miRNA:   3'- auuGGUGGCGGCGCGGCg---CGU-CCGgc -5'
19109 5' -64.3 NC_004684.1 + 65062 0.67 0.274507
Target:  5'- aUGACCGCCGCCaguuCGuCCuGCGCGGugaucauGCCGu -3'
miRNA:   3'- -AUUGGUGGCGGc---GC-GG-CGCGUC-------CGGC- -5'
19109 5' -64.3 NC_004684.1 + 64872 0.66 0.323223
Target:  5'- cAGCguCCGCaGUGCCGgGCgucguugAGGCCGc -3'
miRNA:   3'- aUUGguGGCGgCGCGGCgCG-------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 64774 0.69 0.218023
Target:  5'- uUGGCCACCGCCugcuuccagaacuccGCGUCGgCGUAcucGGUCGg -3'
miRNA:   3'- -AUUGGUGGCGG---------------CGCGGC-GCGU---CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 64412 0.68 0.232417
Target:  5'- gGugCGCCGCC-CGCCGUcCAGGgCa -3'
miRNA:   3'- aUugGUGGCGGcGCGGCGcGUCCgGc -5'
19109 5' -64.3 NC_004684.1 + 64285 0.66 0.33144
Target:  5'- aGAUgACCG-CGCGCaguGCGCccuGGCCGu -3'
miRNA:   3'- aUUGgUGGCgGCGCGg--CGCGu--CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 64084 0.66 0.339043
Target:  5'- --cCCACucguCGUCGCGCuCGCGCuGuGCCa -3'
miRNA:   3'- auuGGUG----GCGGCGCG-GCGCGuC-CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.