miRNA display CGI


Results 21 - 40 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 63584 0.73 0.107883
Target:  5'- cGGCCugCGCgGCGCgGCGguGGUUa -3'
miRNA:   3'- aUUGGugGCGgCGCGgCGCguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 63490 0.67 0.288475
Target:  5'- aGGCCuCCaGCUGCGCCuGCGCcagcAGGgCGg -3'
miRNA:   3'- aUUGGuGG-CGGCGCGG-CGCG----UCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 63360 0.68 0.25001
Target:  5'- aGGCCACCGUCGCcauGCCGgugaacggcaGCAGGUgGu -3'
miRNA:   3'- aUUGGUGGCGGCG---CGGCg---------CGUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 63220 0.66 0.323964
Target:  5'- cGGCCACCGgCGgcucguUGCCGgGCGucGGCCc -3'
miRNA:   3'- aUUGGUGGCgGC------GCGGCgCGU--CCGGc -5'
19109 5' -64.3 NC_004684.1 + 63207 0.72 0.119876
Target:  5'- gAACCACCGCgCcCGCCGgGCgcaaccGGGCCa -3'
miRNA:   3'- aUUGGUGGCG-GcGCGGCgCG------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 63157 0.73 0.105066
Target:  5'- cGGCUcCUG-CGCGCCGCGCAGGCg- -3'
miRNA:   3'- aUUGGuGGCgGCGCGGCGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 62951 0.7 0.172215
Target:  5'- cGGCCuCCaGCUGCGCCa-GCAGGCCc -3'
miRNA:   3'- aUUGGuGG-CGGCGCGGcgCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 62291 0.79 0.033653
Target:  5'- cAGgCGCUGCUccaGCGCCGCGCGGGCCu -3'
miRNA:   3'- aUUgGUGGCGG---CGCGGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 62145 0.67 0.274507
Target:  5'- -cGCC-UCGCCGUGCCcggccuuGCGCAGGgCu -3'
miRNA:   3'- auUGGuGGCGGCGCGG-------CGCGUCCgGc -5'
19109 5' -64.3 NC_004684.1 + 61988 0.66 0.338277
Target:  5'- gAGCCAcccgcacCCGCCGCGCacaauCGCGaCGGGgaCGg -3'
miRNA:   3'- aUUGGU-------GGCGGCGCG-----GCGC-GUCCg-GC- -5'
19109 5' -64.3 NC_004684.1 + 61909 0.67 0.275159
Target:  5'- gAACCACCucuaUCGCGggGUGCGGGCCa -3'
miRNA:   3'- aUUGGUGGc---GGCGCggCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 61687 0.7 0.163648
Target:  5'- -cGCCAUuggCGUCgGUGCCGUggGCAGGCCGg -3'
miRNA:   3'- auUGGUG---GCGG-CGCGGCG--CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 61475 0.73 0.099637
Target:  5'- -uGCCACCuaGUCGauguCGCCGCGCAGGCgGc -3'
miRNA:   3'- auUGGUGG--CGGC----GCGGCGCGUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 61383 0.73 0.099637
Target:  5'- aGGCCACCGCguccgauggUGCGCCugaGC-CAGGCCGg -3'
miRNA:   3'- aUUGGUGGCG---------GCGCGG---CGcGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 61314 0.73 0.102318
Target:  5'- -cACCGCCGCCGgGCCGCcGCccucGGCgGc -3'
miRNA:   3'- auUGGUGGCGGCgCGGCG-CGu---CCGgC- -5'
19109 5' -64.3 NC_004684.1 + 61154 0.66 0.316613
Target:  5'- -cAUCACCGUCGaaggccugGCCGCccaGCuGGCCGa -3'
miRNA:   3'- auUGGUGGCGGCg-------CGGCG---CGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 61113 0.7 0.159509
Target:  5'- cGGCUACaguuCGCCGCGCuCGUGCAuccGGCCc -3'
miRNA:   3'- aUUGGUG----GCGGCGCG-GCGCGU---CCGGc -5'
19109 5' -64.3 NC_004684.1 + 61013 0.79 0.037567
Target:  5'- -cGCCAacaCGCUGCGCaaCGCGCAGGCCa -3'
miRNA:   3'- auUGGUg--GCGGCGCG--GCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 60980 0.67 0.281755
Target:  5'- -cGCCGCCGCCGaGCUGUaCAccucGGCCa -3'
miRNA:   3'- auUGGUGGCGGCgCGGCGcGU----CCGGc -5'
19109 5' -64.3 NC_004684.1 + 60920 0.68 0.219644
Target:  5'- -cACCACCGCCGCccaGCUggucaucauccccuGCGCcucGGCCa -3'
miRNA:   3'- auUGGUGGCGGCG---CGG--------------CGCGu--CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.