miRNA display CGI


Results 41 - 60 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 60687 0.69 0.195404
Target:  5'- cGGCUugC-UCGCGCCGaCGguGGCCa -3'
miRNA:   3'- aUUGGugGcGGCGCGGC-GCguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 60590 0.78 0.046779
Target:  5'- --uCCA-CGCCGCGCacgguGCGCAGGCCGg -3'
miRNA:   3'- auuGGUgGCGGCGCGg----CGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 60543 0.67 0.295321
Target:  5'- -cACCACCaCgGCGUCGCccuucgcgccGUAGGCCa -3'
miRNA:   3'- auUGGUGGcGgCGCGGCG----------CGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 60523 0.67 0.275159
Target:  5'- cGACCGCagGCUGaucuCGCCGCGCccGGuGCCGu -3'
miRNA:   3'- aUUGGUGg-CGGC----GCGGCGCG--UC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 60340 0.66 0.339043
Target:  5'- cGAUCACCGCgCGUucgGCCaGCGgugcCAGGUCGg -3'
miRNA:   3'- aUUGGUGGCG-GCG---CGG-CGC----GUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 60071 0.69 0.210593
Target:  5'- cGGCC-CgGCgGC-CCGUGCGGGCCu -3'
miRNA:   3'- aUUGGuGgCGgCGcGGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 59984 0.76 0.064674
Target:  5'- gGACCuuGCCGCaCGCGCCGCaguauuggacggcGCAGGCgGg -3'
miRNA:   3'- aUUGG--UGGCG-GCGCGGCG-------------CGUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 59804 0.72 0.121778
Target:  5'- cGACCACCggguuGCCGCGCaccagccgcaccaGCGCcacccgGGGCCGg -3'
miRNA:   3'- aUUGGUGG-----CGGCGCGg------------CGCG------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 59688 0.69 0.185817
Target:  5'- --uCCugCGCCGaGCUGCGCGGGgUGc -3'
miRNA:   3'- auuGGugGCGGCgCGGCGCGUCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 58961 0.69 0.210593
Target:  5'- gGGCCcuguCCGCCGagcuGCCGCGCuGGUUa -3'
miRNA:   3'- aUUGGu---GGCGGCg---CGGCGCGuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 58804 0.69 0.190557
Target:  5'- aGGCCACCGgCGCGUucaUGCucgGCAGGCUc -3'
miRNA:   3'- aUUGGUGGCgGCGCG---GCG---CGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 58622 0.69 0.215878
Target:  5'- cGGCCcgugGCgGCUgGUGCCGCGCuGGGCCu -3'
miRNA:   3'- aUUGG----UGgCGG-CGCGGCGCG-UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 58375 0.67 0.295321
Target:  5'- -uGCCGCC-CCGCacggcaCCGCGCguggAGGCCu -3'
miRNA:   3'- auUGGUGGcGGCGc-----GGCGCG----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 58247 0.69 0.215878
Target:  5'- -uGCCGCaccuGCCGCGCCGagGC-GGUCGa -3'
miRNA:   3'- auUGGUGg---CGGCGCGGCg-CGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 58146 0.69 0.200357
Target:  5'- aUGAgCACCGCCaGCGUCGgcaGCAGGuUCGg -3'
miRNA:   3'- -AUUgGUGGCGG-CGCGGCg--CGUCC-GGC- -5'
19109 5' -64.3 NC_004684.1 + 58088 0.66 0.302292
Target:  5'- cAGCUcgACCGggagCGCGCCGaGCAuGGCCGg -3'
miRNA:   3'- aUUGG--UGGCg---GCGCGGCgCGU-CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 57943 0.67 0.275159
Target:  5'- cGACCGCCuGCgGUGCuCGCuGC-GGCUGg -3'
miRNA:   3'- aUUGGUGG-CGgCGCG-GCG-CGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 57554 0.75 0.076254
Target:  5'- cGACCGCCgaGCUGCGCCG-GUuGGCCGa -3'
miRNA:   3'- aUUGGUGG--CGGCGCGGCgCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 57484 0.68 0.226788
Target:  5'- --cCCACCGUCgacaaGCGCCGCacGCAGGUg- -3'
miRNA:   3'- auuGGUGGCGG-----CGCGGCG--CGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 57072 0.67 0.281755
Target:  5'- cGGCCugCGuuGCGgCGCGCAcaucggugcGGgCGa -3'
miRNA:   3'- aUUGGugGCggCGCgGCGCGU---------CCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.