miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 57049 0.67 0.281755
Target:  5'- gGGCCACgGCaccaGCGCgGUGgCAGGCa- -3'
miRNA:   3'- aUUGGUGgCGg---CGCGgCGC-GUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 56589 0.7 0.173976
Target:  5'- cAGCCGCCggaugccgcuacgguGCCGaCGCCGuCGCGGGUg- -3'
miRNA:   3'- aUUGGUGG---------------CGGC-GCGGC-GCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 56378 0.69 0.20542
Target:  5'- gUAACUGCCGCCGUGUC-CGU-GGUCGg -3'
miRNA:   3'- -AUUGGUGGCGGCGCGGcGCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 55948 0.72 0.129673
Target:  5'- aGGCCGaCGCCGaCGCCGCGCuccagcGGGUCa -3'
miRNA:   3'- aUUGGUgGCGGC-GCGGCGCG------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 55839 0.68 0.25001
Target:  5'- gUAGCCGCUGUgGuUGCgGgGCGGGUCGa -3'
miRNA:   3'- -AUUGGUGGCGgC-GCGgCgCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 55738 0.7 0.167883
Target:  5'- --uUgGCCGCCGUGCUG-GCGuGGCCGa -3'
miRNA:   3'- auuGgUGGCGGCGCGGCgCGU-CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 55553 0.72 0.129673
Target:  5'- -cGCCgcugGCCGCCGUgGCC-CGguGGCCGg -3'
miRNA:   3'- auUGG----UGGCGGCG-CGGcGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 55383 0.69 0.190557
Target:  5'- -cACCGCCGCCGCGaagucCUGCGgGGucauGCCGu -3'
miRNA:   3'- auUGGUGGCGGCGC-----GGCGCgUC----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 55300 0.72 0.124359
Target:  5'- gUGAUgGCCGCCGCGCgggccagcaccucguCGCGCucggcGGCCa -3'
miRNA:   3'- -AUUGgUGGCGGCGCG---------------GCGCGu----CCGGc -5'
19109 5' -64.3 NC_004684.1 + 55102 0.73 0.105066
Target:  5'- --uCCACCGUuggCGCGCUGCGCagcacGGGCCu -3'
miRNA:   3'- auuGGUGGCG---GCGCGGCGCG-----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 54625 0.79 0.038613
Target:  5'- uUGGCCGCaGgCGCaGCCGCGCGGGCCa -3'
miRNA:   3'- -AUUGGUGgCgGCG-CGGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 54497 0.66 0.33144
Target:  5'- -cACCGCUgGCgGCGa-GCGCAGGCUc -3'
miRNA:   3'- auUGGUGG-CGgCGCggCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 54428 0.72 0.133099
Target:  5'- -uGCCuGCCGCCGCGUCG-GCGGGagcaCCGg -3'
miRNA:   3'- auUGG-UGGCGGCGCGGCgCGUCC----GGC- -5'
19109 5' -64.3 NC_004684.1 + 54272 0.66 0.33144
Target:  5'- cAGCCAgCGCCGCcacccgGCCgggggugcGCGCAucGGCCc -3'
miRNA:   3'- aUUGGUgGCGGCG------CGG--------CGCGU--CCGGc -5'
19109 5' -64.3 NC_004684.1 + 54261 0.69 0.215878
Target:  5'- gAGgCGCUGCguggagaaGCuGCCGCGCuGGCCGg -3'
miRNA:   3'- aUUgGUGGCGg-------CG-CGGCGCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 53601 0.66 0.33144
Target:  5'- gGGCgACa-CCGCGCUggagGCGCAGGuuGg -3'
miRNA:   3'- aUUGgUGgcGGCGCGG----CGCGUCCggC- -5'
19109 5' -64.3 NC_004684.1 + 53410 0.67 0.275159
Target:  5'- gUGGCCggGCUgGCCuGCGCCGCGCGacuGCCa -3'
miRNA:   3'- -AUUGG--UGG-CGG-CGCGGCGCGUc--CGGc -5'
19109 5' -64.3 NC_004684.1 + 53348 0.66 0.302292
Target:  5'- -cGCCACCGCCuuGCUG-GuCGGGUCGc -3'
miRNA:   3'- auUGGUGGCGGcgCGGCgC-GUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 53183 0.7 0.176647
Target:  5'- gGACagGCCGaCCGCGCCGCu--GGCCa -3'
miRNA:   3'- aUUGg-UGGC-GGCGCGGCGcguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 52390 0.67 0.26234
Target:  5'- cGACCAugacCUGCuCGCGCagGCGCAGGUUc -3'
miRNA:   3'- aUUGGU----GGCG-GCGCGg-CGCGUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.