miRNA display CGI


Results 1 - 20 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 61314 0.73 0.102318
Target:  5'- -cACCGCCGCCGgGCCGCcGCccucGGCgGc -3'
miRNA:   3'- auUGGUGGCGGCgCGGCG-CGu---CCGgC- -5'
19109 5' -64.3 NC_004684.1 + 57554 0.75 0.076254
Target:  5'- cGACCGCCgaGCUGCGCCG-GUuGGCCGa -3'
miRNA:   3'- aUUGGUGG--CGGCGCGGCgCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 39511 0.74 0.081992
Target:  5'- uUGGCCaugcacgggauaauACCGCCGUG-CGUGCAGGCCu -3'
miRNA:   3'- -AUUGG--------------UGGCGGCGCgGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 3700 0.74 0.082654
Target:  5'- aGAUCGCCaGCgC-CGCCGCGCuGGCCGg -3'
miRNA:   3'- aUUGGUGG-CG-GcGCGGCGCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 65455 0.74 0.089088
Target:  5'- cGGCCACCG-UGCGCCGguaccaggcccgGCAGGCCGg -3'
miRNA:   3'- aUUGGUGGCgGCGCGGCg-----------CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 31083 0.74 0.094223
Target:  5'- gAACgUGCCGCCGagggcuggcaggaCGCCGCGCAGGCg- -3'
miRNA:   3'- aUUG-GUGGCGGC-------------GCGGCGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 7236 0.73 0.096766
Target:  5'- -uGCCACCGCCGagcaaauccgcuaCGCCaccgaGCAGGCCGc -3'
miRNA:   3'- auUGGUGGCGGC-------------GCGGcg---CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 61475 0.73 0.099637
Target:  5'- -uGCCACCuaGUCGauguCGCCGCGCAGGCgGc -3'
miRNA:   3'- auUGGUGG--CGGC----GCGGCGCGUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 65322 0.73 0.099637
Target:  5'- -cACCACgGCCaGCGCCaG-GCAGGCCa -3'
miRNA:   3'- auUGGUGgCGG-CGCGG-CgCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 40625 0.75 0.074228
Target:  5'- uUGAUCACCGCCGCGCgGCcgacgaacuuGgGGGCCu -3'
miRNA:   3'- -AUUGGUGGCGGCGCGgCG----------CgUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 59984 0.76 0.064674
Target:  5'- gGACCuuGCCGCaCGCGCCGCaguauuggacggcGCAGGCgGg -3'
miRNA:   3'- aUUGG--UGGCG-GCGCGGCG-------------CGUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 12880 0.77 0.053473
Target:  5'- aGGCCGCCGCCGgggagccugcgcuCGCCGCcaGCGGuGCCGg -3'
miRNA:   3'- aUUGGUGGCGGC-------------GCGGCG--CGUC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 26516 0.79 0.038613
Target:  5'- cUGACCACCGCugaCGUGUCGCGCcugggcggucAGGCCGg -3'
miRNA:   3'- -AUUGGUGGCG---GCGCGGCGCG----------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 24907 0.78 0.041926
Target:  5'- aUGGCCGCCGCCGCGaucagCGCGCuGGgCGg -3'
miRNA:   3'- -AUUGGUGGCGGCGCg----GCGCGuCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 13968 0.78 0.044288
Target:  5'- cUGACgGCaGUCGCGCgGCGCAGGCCa -3'
miRNA:   3'- -AUUGgUGgCGGCGCGgCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 60590 0.78 0.046779
Target:  5'- --uCCA-CGCCGCGCacgguGCGCAGGCCGg -3'
miRNA:   3'- auuGGUgGCGGCGCGg----CGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 42395 0.78 0.046779
Target:  5'- cGGCC-CCGCCgaccccaacGCGCCGaCGCGGGCCa -3'
miRNA:   3'- aUUGGuGGCGG---------CGCGGC-GCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 48764 0.77 0.050774
Target:  5'- -cGCCACgcuggacuUGCCGaCGCCGgGCGGGCCGa -3'
miRNA:   3'- auUGGUG--------GCGGC-GCGGCgCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 9863 0.77 0.052178
Target:  5'- gAGCUGCCGCCGgaucccgaCGCCGCGCaggagcAGGCCGc -3'
miRNA:   3'- aUUGGUGGCGGC--------GCGGCGCG------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 31975 0.77 0.053473
Target:  5'- -cACCACCuCCGCGCUGaucuaccCGCAGGCCGc -3'
miRNA:   3'- auUGGUGGcGGCGCGGC-------GCGUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.