miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 65322 0.73 0.099637
Target:  5'- -cACCACgGCCaGCGCCaG-GCAGGCCa -3'
miRNA:   3'- auUGGUGgCGG-CGCGG-CgCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 61314 0.73 0.102318
Target:  5'- -cACCGCCGCCGgGCCGCcGCccucGGCgGc -3'
miRNA:   3'- auUGGUGGCGGCgCGGCG-CGu---CCGgC- -5'
19109 5' -64.3 NC_004684.1 + 48438 0.72 0.119876
Target:  5'- --uCCACCGCCuuGCCGaccuCGguGGCCGa -3'
miRNA:   3'- auuGGUGGCGGcgCGGC----GCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 2955 0.72 0.129334
Target:  5'- aGGCCAUCGgCGCGCUGCuguugcgGguGGCCa -3'
miRNA:   3'- aUUGGUGGCgGCGCGGCG-------CguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 55948 0.72 0.129673
Target:  5'- aGGCCGaCGCCGaCGCCGCGCuccagcGGGUCa -3'
miRNA:   3'- aUUGGUgGCGGC-GCGGCGCG------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 55553 0.72 0.129673
Target:  5'- -cGCCgcugGCCGCCGUgGCC-CGguGGCCGg -3'
miRNA:   3'- auUGG----UGGCGGCG-CGGcGCguCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 19439 0.72 0.133099
Target:  5'- aAACCACCGugcgcccaugcCCGgGCgGCGguGGCCc -3'
miRNA:   3'- aUUGGUGGC-----------GGCgCGgCGCguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 36760 0.71 0.140204
Target:  5'- ---aCGCCGCCaGgGCCGCGCccGGuGCCGa -3'
miRNA:   3'- auugGUGGCGG-CgCGGCGCG--UC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 52315 0.71 0.143886
Target:  5'- -cGCgCGCaGCUGCGCggUGCGCAGGCCa -3'
miRNA:   3'- auUG-GUGgCGGCGCG--GCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 25390 0.7 0.159509
Target:  5'- ---aCGCCGCCGCGCacaGCGgC-GGCCa -3'
miRNA:   3'- auugGUGGCGGCGCGg--CGC-GuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 65765 0.72 0.116766
Target:  5'- uUGGCCGCCG-CGCGCCG-GUGGGCgCGc -3'
miRNA:   3'- -AUUGGUGGCgGCGCGGCgCGUCCG-GC- -5'
19109 5' -64.3 NC_004684.1 + 47186 0.72 0.116766
Target:  5'- gGGCCGCCGCUGCGCgGCGaacGGUgCGg -3'
miRNA:   3'- aUUGGUGGCGGCGCGgCGCgu-CCG-GC- -5'
19109 5' -64.3 NC_004684.1 + 10313 0.73 0.102318
Target:  5'- ---gCACCGaugugCGCGCCGCaacGCAGGCCGc -3'
miRNA:   3'- auugGUGGCg----GCGCGGCG---CGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 36226 0.73 0.105066
Target:  5'- gUGGCCACCGCCGaGaCCGCugGCGuGGCCa -3'
miRNA:   3'- -AUUGGUGGCGGCgC-GGCG--CGU-CCGGc -5'
19109 5' -64.3 NC_004684.1 + 38095 0.73 0.105066
Target:  5'- aAACCACCGCCGUcggaguucGCgGUGCcggagcaaguggAGGCCGa -3'
miRNA:   3'- aUUGGUGGCGGCG--------CGgCGCG------------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 16588 0.73 0.105066
Target:  5'- -uACCGCCGCCaGCGuCUGCuGguGGCCu -3'
miRNA:   3'- auUGGUGGCGG-CGC-GGCG-CguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 5938 0.73 0.106184
Target:  5'- cUGGCCACCgggcgguccaaccugGCCGCGCCGgugaGCGaccGGCCGa -3'
miRNA:   3'- -AUUGGUGG---------------CGGCGCGGCg---CGU---CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 63584 0.73 0.107883
Target:  5'- cGGCCugCGCgGCGCgGCGguGGUUa -3'
miRNA:   3'- aUUGGugGCGgCGCGgCGCguCCGGc -5'
19109 5' -64.3 NC_004684.1 + 20352 0.73 0.110771
Target:  5'- gGugCACCGUCa--CCGCGCAGGCCa -3'
miRNA:   3'- aUugGUGGCGGcgcGGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 3865 0.72 0.113732
Target:  5'- aGGCaCGCCGCUGCGCaGUGCcaAGGCCu -3'
miRNA:   3'- aUUG-GUGGCGGCGCGgCGCG--UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.