Results 81 - 100 of 326 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 65849 | 0.7 | 0.163648 |
Target: 5'- gGugCACCGCaUGCGa-GCGCGGGUCGc -3' miRNA: 3'- aUugGUGGCG-GCGCggCGCGUCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 26410 | 0.7 | 0.163648 |
Target: 5'- -cGCCACCGgCGCGCUG-GCAGcgggguucgccGCCGg -3' miRNA: 3'- auUGGUGGCgGCGCGGCgCGUC-----------CGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 19329 | 0.7 | 0.163648 |
Target: 5'- -cGCCGCCGCCGUgGCCGaGCGGGaggCGc -3' miRNA: 3'- auUGGUGGCGGCG-CGGCgCGUCCg--GC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 61687 | 0.7 | 0.163648 |
Target: 5'- -cGCCAUuggCGUCgGUGCCGUggGCAGGCCGg -3' miRNA: 3'- auUGGUG---GCGG-CGCGGCG--CGUCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 21271 | 0.7 | 0.167883 |
Target: 5'- cAACCACC-CCG-GCaCGCGCGcccGGCCGu -3' miRNA: 3'- aUUGGUGGcGGCgCG-GCGCGU---CCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 2996 | 0.7 | 0.167883 |
Target: 5'- aGGCCAUCaCCGCGCCGUGCacacaGGuGCUGa -3' miRNA: 3'- aUUGGUGGcGGCGCGGCGCG-----UC-CGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 43413 | 0.7 | 0.167883 |
Target: 5'- -cGCCGCCGCCGaacccgagGCCcgGCG-AGGCCGa -3' miRNA: 3'- auUGGUGGCGGCg-------CGG--CGCgUCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 25390 | 0.7 | 0.159509 |
Target: 5'- ---aCGCCGCCGCGCacaGCGgC-GGCCa -3' miRNA: 3'- auugGUGGCGGCGCGg--CGC-GuCCGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 52315 | 0.71 | 0.143886 |
Target: 5'- -cGCgCGCaGCUGCGCggUGCGCAGGCCa -3' miRNA: 3'- auUG-GUGgCGGCGCG--GCGCGUCCGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 36760 | 0.71 | 0.140204 |
Target: 5'- ---aCGCCGCCaGgGCCGCGCccGGuGCCGa -3' miRNA: 3'- auugGUGGCGG-CgCGGCGCG--UC-CGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 20352 | 0.73 | 0.110771 |
Target: 5'- gGugCACCGUCa--CCGCGCAGGCCa -3' miRNA: 3'- aUugGUGGCGGcgcGGCGCGUCCGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 3865 | 0.72 | 0.113732 |
Target: 5'- aGGCaCGCCGCUGCGCaGUGCcaAGGCCu -3' miRNA: 3'- aUUG-GUGGCGGCGCGgCGCG--UCCGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 47186 | 0.72 | 0.116766 |
Target: 5'- gGGCCGCCGCUGCGCgGCGaacGGUgCGg -3' miRNA: 3'- aUUGGUGGCGGCGCGgCGCgu-CCG-GC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 65765 | 0.72 | 0.116766 |
Target: 5'- uUGGCCGCCG-CGCGCCG-GUGGGCgCGc -3' miRNA: 3'- -AUUGGUGGCgGCGCGGCgCGUCCG-GC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 48438 | 0.72 | 0.119876 |
Target: 5'- --uCCACCGCCuuGCCGaccuCGguGGCCGa -3' miRNA: 3'- auuGGUGGCGGcgCGGC----GCguCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 2955 | 0.72 | 0.129334 |
Target: 5'- aGGCCAUCGgCGCGCUGCuguugcgGguGGCCa -3' miRNA: 3'- aUUGGUGGCgGCGCGGCG-------CguCCGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 55948 | 0.72 | 0.129673 |
Target: 5'- aGGCCGaCGCCGaCGCCGCGCuccagcGGGUCa -3' miRNA: 3'- aUUGGUgGCGGC-GCGGCGCG------UCCGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 55553 | 0.72 | 0.129673 |
Target: 5'- -cGCCgcugGCCGCCGUgGCC-CGguGGCCGg -3' miRNA: 3'- auUGG----UGGCGGCG-CGGcGCguCCGGC- -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 19439 | 0.72 | 0.133099 |
Target: 5'- aAACCACCGugcgcccaugcCCGgGCgGCGguGGCCc -3' miRNA: 3'- aUUGGUGGC-----------GGCgCGgCGCguCCGGc -5' |
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19109 | 5' | -64.3 | NC_004684.1 | + | 4207 | 0.7 | 0.175307 |
Target: 5'- cUGAUCACCGCCagccacgacugcauGCGCCuGCGCGGcgcgcaggaGCCGc -3' miRNA: 3'- -AUUGGUGGCGG--------------CGCGG-CGCGUC---------CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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