Results 21 - 40 of 326 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 33685 | 0.75 | 0.078332 |
Target: 5'- gGGCCACCGCCGCuGCCGCugGCgAGGgUGu -3' miRNA: 3'- aUUGGUGGCGGCG-CGGCG--CG-UCCgGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 47939 | 0.75 | 0.068455 |
Target: 5'- gGGCCACCGCCGC-CCGgGCAuGGgCGc -3' miRNA: 3'- aUUGGUGGCGGCGcGGCgCGU-CCgGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 857 | 0.77 | 0.050774 |
Target: 5'- -cGCCuACCGCCGUGCC-CGCcGGGCCGc -3' miRNA: 3'- auUGG-UGGCGGCGCGGcGCG-UCCGGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 46085 | 0.8 | 0.032739 |
Target: 5'- gGACCACCGCCucgccuGCGuuGCGCAgauacGGCCGg -3' miRNA: 3'- aUUGGUGGCGG------CGCggCGCGU-----CCGGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 47713 | 0.73 | 0.105066 |
Target: 5'- aGGCCuuGCCGCCGCGCCG-GUAGaGCgCGu -3' miRNA: 3'- aUUGG--UGGCGGCGCGGCgCGUC-CG-GC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 40068 | 0.74 | 0.091989 |
Target: 5'- -uACCGCCGUCGUcaaagcugGCCGCaccgaGCAGGCCa -3' miRNA: 3'- auUGGUGGCGGCG--------CGGCG-----CGUCCGGc -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 46951 | 0.76 | 0.063116 |
Target: 5'- --uUCGCCGCCGUGCacaGCGCcAGGCUGa -3' miRNA: 3'- auuGGUGGCGGCGCGg--CGCG-UCCGGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 26662 | 0.8 | 0.030983 |
Target: 5'- -cGCCACCGCCccCGCCGCGCuGGUCGu -3' miRNA: 3'- auUGGUGGCGGc-GCGGCGCGuCCGGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 9012 | 0.74 | 0.089565 |
Target: 5'- --uCCACgCGCgGUGCCGUGCGGGgCGg -3' miRNA: 3'- auuGGUG-GCGgCGCGGCGCGUCCgGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 20192 | 0.8 | 0.02924 |
Target: 5'- -uACCACCGCCGCaccguucGCCGCGCAgcggcggcccuGGCCGc -3' miRNA: 3'- auUGGUGGCGGCG-------CGGCGCGU-----------CCGGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 7320 | 0.76 | 0.066449 |
Target: 5'- aGGCCcgcacggGCCGCCGgGCCGCGCgccacgagugcgAGGCCu -3' miRNA: 3'- aUUGG-------UGGCGGCgCGGCGCG------------UCCGGc -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 18209 | 0.75 | 0.078332 |
Target: 5'- aGGCCGCCGCCGcCGCCGcCGCcgagacuGcGCCGu -3' miRNA: 3'- aUUGGUGGCGGC-GCGGC-GCGu------C-CGGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 48971 | 0.77 | 0.0551 |
Target: 5'- cGGCCGCCGgUGCGCC-CGCcGGGCCGc -3' miRNA: 3'- aUUGGUGGCgGCGCGGcGCG-UCCGGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 45039 | 0.77 | 0.054651 |
Target: 5'- cGACCGCCGCCGcCGCCGCcaccGCcuguaccggguggcGGGCCa -3' miRNA: 3'- aUUGGUGGCGGC-GCGGCG----CG--------------UCCGGc -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 44950 | 0.78 | 0.045517 |
Target: 5'- gGAUCGCCGCCGCGCCgacggcgaugGCGUugAGGCCc -3' miRNA: 3'- aUUGGUGGCGGCGCGG----------CGCG--UCCGGc -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 61013 | 0.79 | 0.037567 |
Target: 5'- -cGCCAacaCGCUGCGCaaCGCGCAGGCCa -3' miRNA: 3'- auUGGUg--GCGGCGCG--GCGCGUCCGGc -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 51462 | 0.72 | 0.119876 |
Target: 5'- aGGCC-CCGCCaggcuccgGUGCCGgGUAGGCCu -3' miRNA: 3'- aUUGGuGGCGG--------CGCGGCgCGUCCGGc -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 394 | 0.73 | 0.107883 |
Target: 5'- gGAUCACCGCCGUGgCGgGCAaGCUGg -3' miRNA: 3'- aUUGGUGGCGGCGCgGCgCGUcCGGC- -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 55102 | 0.73 | 0.105066 |
Target: 5'- --uCCACCGUuggCGCGCUGCGCagcacGGGCCu -3' miRNA: 3'- auuGGUGGCG---GCGCGGCGCG-----UCCGGc -5' |
|||||||
19109 | 5' | -64.3 | NC_004684.1 | + | 61383 | 0.73 | 0.099637 |
Target: 5'- aGGCCACCGCguccgauggUGCGCCugaGC-CAGGCCGg -3' miRNA: 3'- aUUGGUGGCG---------GCGCGG---CGcGUCCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home