miRNA display CGI


Results 41 - 60 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 63157 0.73 0.105066
Target:  5'- cGGCUcCUG-CGCGCCGCGCAGGCg- -3'
miRNA:   3'- aUUGGuGGCgGCGCGGCGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 46951 0.76 0.063116
Target:  5'- --uUCGCCGCCGUGCacaGCGCcAGGCUGa -3'
miRNA:   3'- auuGGUGGCGGCGCGg--CGCG-UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 26662 0.8 0.030983
Target:  5'- -cGCCACCGCCccCGCCGCGCuGGUCGu -3'
miRNA:   3'- auUGGUGGCGGc-GCGGCGCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 42096 0.73 0.105066
Target:  5'- gAACCGCCGCCGCcUgGUGU-GGCCGg -3'
miRNA:   3'- aUUGGUGGCGGCGcGgCGCGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 20192 0.8 0.02924
Target:  5'- -uACCACCGCCGCaccguucGCCGCGCAgcggcggcccuGGCCGc -3'
miRNA:   3'- auUGGUGGCGGCG-------CGGCGCGU-----------CCGGC- -5'
19109 5' -64.3 NC_004684.1 + 17107 0.71 0.151515
Target:  5'- --gUCGCCGUCGgGCCugGCGCuGGCCa -3'
miRNA:   3'- auuGGUGGCGGCgCGG--CGCGuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 61013 0.79 0.037567
Target:  5'- -cGCCAacaCGCUGCGCaaCGCGCAGGCCa -3'
miRNA:   3'- auUGGUg--GCGGCGCG--GCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 41396 0.71 0.143886
Target:  5'- cGGCCGCCGCCaggaGCGCCa-GCGGGuuGc -3'
miRNA:   3'- aUUGGUGGCGG----CGCGGcgCGUCCggC- -5'
19109 5' -64.3 NC_004684.1 + 9874 0.71 0.136609
Target:  5'- gGGCCACCGCCuCGggauCCgGCGCAGGCa- -3'
miRNA:   3'- aUUGGUGGCGGcGC----GG-CGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 24721 0.72 0.133099
Target:  5'- uUGGCCACCGCCGUGaugcccuccaCCGCGCucaucGCUGg -3'
miRNA:   3'- -AUUGGUGGCGGCGC----------GGCGCGuc---CGGC- -5'
19109 5' -64.3 NC_004684.1 + 55300 0.72 0.124359
Target:  5'- gUGAUgGCCGCCGCGCgggccagcaccucguCGCGCucggcGGCCa -3'
miRNA:   3'- -AUUGgUGGCGGCGCG---------------GCGCGu----CCGGc -5'
19109 5' -64.3 NC_004684.1 + 51462 0.72 0.119876
Target:  5'- aGGCC-CCGCCaggcuccgGUGCCGgGUAGGCCu -3'
miRNA:   3'- aUUGGuGGCGG--------CGCGGCgCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 394 0.73 0.107883
Target:  5'- gGAUCACCGCCGUGgCGgGCAaGCUGg -3'
miRNA:   3'- aUUGGUGGCGGCGCgGCgCGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 41999 0.73 0.102318
Target:  5'- cUGGCCGCCGCUGUgcgcgGCgGCGUAGGCg- -3'
miRNA:   3'- -AUUGGUGGCGGCG-----CGgCGCGUCCGgc -5'
19109 5' -64.3 NC_004684.1 + 9012 0.74 0.089565
Target:  5'- --uCCACgCGCgGUGCCGUGCGGGgCGg -3'
miRNA:   3'- auuGGUG-GCGgCGCGGCGCGUCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 33685 0.75 0.078332
Target:  5'- gGGCCACCGCCGCuGCCGCugGCgAGGgUGu -3'
miRNA:   3'- aUUGGUGGCGGCG-CGGCG--CG-UCCgGC- -5'
19109 5' -64.3 NC_004684.1 + 47939 0.75 0.068455
Target:  5'- gGGCCACCGCCGC-CCGgGCAuGGgCGc -3'
miRNA:   3'- aUUGGUGGCGGCGcGGCgCGU-CCgGC- -5'
19109 5' -64.3 NC_004684.1 + 48971 0.77 0.0551
Target:  5'- cGGCCGCCGgUGCGCC-CGCcGGGCCGc -3'
miRNA:   3'- aUUGGUGGCgGCGCGGcGCG-UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 45039 0.77 0.054651
Target:  5'- cGACCGCCGCCGcCGCCGCcaccGCcuguaccggguggcGGGCCa -3'
miRNA:   3'- aUUGGUGGCGGC-GCGGCG----CG--------------UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 44950 0.78 0.045517
Target:  5'- gGAUCGCCGCCGCGCCgacggcgaugGCGUugAGGCCc -3'
miRNA:   3'- aUUGGUGGCGGCGCGG----------CGCG--UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.