miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19109 5' -64.3 NC_004684.1 + 394 0.73 0.107883
Target:  5'- gGAUCACCGCCGUGgCGgGCAaGCUGg -3'
miRNA:   3'- aUUGGUGGCGGCGCgGCgCGUcCGGC- -5'
19109 5' -64.3 NC_004684.1 + 59804 0.72 0.121778
Target:  5'- cGACCACCggguuGCCGCGCaccagccgcaccaGCGCcacccgGGGCCGg -3'
miRNA:   3'- aUUGGUGG-----CGGCGCGg------------CGCG------UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 54625 0.79 0.038613
Target:  5'- uUGGCCGCaGgCGCaGCCGCGCGGGCCa -3'
miRNA:   3'- -AUUGGUGgCgGCG-CGGCGCGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 33907 0.78 0.046779
Target:  5'- gGGCCGCCGCCGCGUCcacCGCAGccccGCCGa -3'
miRNA:   3'- aUUGGUGGCGGCGCGGc--GCGUC----CGGC- -5'
19109 5' -64.3 NC_004684.1 + 483 0.77 0.0551
Target:  5'- gUGGCCGCCaagGCCGCGCCGa--AGGCCGc -3'
miRNA:   3'- -AUUGGUGG---CGGCGCGGCgcgUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 13055 0.76 0.05662
Target:  5'- --uCCACCGCCGCGCUGUGCuauGCCc -3'
miRNA:   3'- auuGGUGGCGGCGCGGCGCGuc-CGGc -5'
19109 5' -64.3 NC_004684.1 + 19439 0.75 0.068455
Target:  5'- -cACCGCCaGCCGUGCCGaCGCcaccaAGGCCu -3'
miRNA:   3'- auUGGUGG-CGGCGCGGC-GCG-----UCCGGc -5'
19109 5' -64.3 NC_004684.1 + 18209 0.75 0.078332
Target:  5'- aGGCCGCCGCCGcCGCCGcCGCcgagacuGcGCCGu -3'
miRNA:   3'- aUUGGUGGCGGC-GCGGC-GCGu------C-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 40068 0.74 0.091989
Target:  5'- -uACCGCCGUCGUcaaagcugGCCGCaccgaGCAGGCCa -3'
miRNA:   3'- auUGGUGGCGGCG--------CGGCG-----CGUCCGGc -5'
19109 5' -64.3 NC_004684.1 + 26691 0.73 0.104788
Target:  5'- cGGCCACCGCCGCccagcugaaguucGUCGCcaccuuGCuGGCCGa -3'
miRNA:   3'- aUUGGUGGCGGCG-------------CGGCG------CGuCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 42192 0.69 0.190557
Target:  5'- aAGCCACC-CgGUGCCaGCGCcuGGCCa -3'
miRNA:   3'- aUUGGUGGcGgCGCGG-CGCGu-CCGGc -5'
19109 5' -64.3 NC_004684.1 + 66127 0.7 0.176647
Target:  5'- aUGGCCACCaGCCaGCGCaucuGgGCcgGGGCCGg -3'
miRNA:   3'- -AUUGGUGG-CGG-CGCGg---CgCG--UCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 27047 0.72 0.129673
Target:  5'- aGGCCGCCGCCaGCGaCCuGCcCAGcGCCGa -3'
miRNA:   3'- aUUGGUGGCGG-CGC-GG-CGcGUC-CGGC- -5'
19109 5' -64.3 NC_004684.1 + 54428 0.72 0.133099
Target:  5'- -uGCCuGCCGCCGCGUCG-GCGGGagcaCCGg -3'
miRNA:   3'- auUGG-UGGCGGCGCGGCgCGUCC----GGC- -5'
19109 5' -64.3 NC_004684.1 + 41396 0.71 0.143886
Target:  5'- cGGCCGCCGCCaggaGCGCCa-GCGGGuuGc -3'
miRNA:   3'- aUUGGUGGCGG----CGCGGcgCGUCCggC- -5'
19109 5' -64.3 NC_004684.1 + 17107 0.71 0.151515
Target:  5'- --gUCGCCGUCGgGCCugGCGCuGGCCa -3'
miRNA:   3'- auuGGUGGCGGCgCGG--CGCGuCCGGc -5'
19109 5' -64.3 NC_004684.1 + 18823 0.7 0.159509
Target:  5'- --uCCAUCGUCaagcuCGgCGCGCAGGCCGa -3'
miRNA:   3'- auuGGUGGCGGc----GCgGCGCGUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 39601 0.7 0.163648
Target:  5'- gGACCgaACCGCCGCGCaC-CGuCGGGCgGg -3'
miRNA:   3'- aUUGG--UGGCGGCGCG-GcGC-GUCCGgC- -5'
19109 5' -64.3 NC_004684.1 + 40203 0.7 0.167883
Target:  5'- -cACCGCCGCCaaagauCGCCGUGgcCAGGUCGc -3'
miRNA:   3'- auUGGUGGCGGc-----GCGGCGC--GUCCGGC- -5'
19109 5' -64.3 NC_004684.1 + 40817 0.7 0.172215
Target:  5'- -cGCaCACCGCCGCGCgccaGgGCGcGCCGg -3'
miRNA:   3'- auUG-GUGGCGGCGCGg---CgCGUcCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.