miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19110 3' -57.9 NC_004684.1 + 40508 0.67 0.640998
Target:  5'- aCCUGGUugacgcgcacGCCcaGGUUGUCG-GCGGUGGc -3'
miRNA:   3'- -GGGCCA----------CGGc-CCAGUAGCaUGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 67075 0.67 0.640998
Target:  5'- aCCCGGUG-CGGG-CGUUGgccuCGGcGGc -3'
miRNA:   3'- -GGGCCACgGCCCaGUAGCau--GCCaCC- -5'
19110 3' -57.9 NC_004684.1 + 2711 0.67 0.640998
Target:  5'- gCCGGUGCCGGGggcaaGUGCGc--- -3'
miRNA:   3'- gGGCCACGGCCCaguagCAUGCcacc -5'
19110 3' -57.9 NC_004684.1 + 55570 0.67 0.638916
Target:  5'- gCCCGGUgGCCGGGg-GUCcaggcaccaagGCGGUGc -3'
miRNA:   3'- -GGGCCA-CGGCCCagUAGca---------UGCCACc -5'
19110 3' -57.9 NC_004684.1 + 47099 0.67 0.634753
Target:  5'- -gCGGUGCCGGGacgcggggguccggCAgagCGUGCgccucGGUGGc -3'
miRNA:   3'- ggGCCACGGCCCa-------------GUa--GCAUG-----CCACC- -5'
19110 3' -57.9 NC_004684.1 + 18840 0.67 0.630589
Target:  5'- aCUCGcagGUCGGGUCGUgGU-CGGUGa -3'
miRNA:   3'- -GGGCca-CGGCCCAGUAgCAuGCCACc -5'
19110 3' -57.9 NC_004684.1 + 3958 0.67 0.630589
Target:  5'- aCCGGacgaccccgGCCaGGUCAUCcuGgcCGGUGGc -3'
miRNA:   3'- gGGCCa--------CGGcCCAGUAG--CauGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 10891 0.67 0.620182
Target:  5'- gCCGGUGaccacCCGGGUCGgcgCGUACaGGc-- -3'
miRNA:   3'- gGGCCAC-----GGCCCAGUa--GCAUG-CCacc -5'
19110 3' -57.9 NC_004684.1 + 19037 0.67 0.620182
Target:  5'- aCCGGcgGCCGGGcaggUCAUgaaGUGCGGcaggcUGGc -3'
miRNA:   3'- gGGCCa-CGGCCC----AGUAg--CAUGCC-----ACC- -5'
19110 3' -57.9 NC_004684.1 + 25874 0.67 0.620182
Target:  5'- cCUCGGccagGCCGGG-CAgaaCGUcaGCGGUGa -3'
miRNA:   3'- -GGGCCa---CGGCCCaGUa--GCA--UGCCACc -5'
19110 3' -57.9 NC_004684.1 + 15296 0.67 0.620182
Target:  5'- gCUGG-GCCuGGUCGaCGUGgcCGGUGGc -3'
miRNA:   3'- gGGCCaCGGcCCAGUaGCAU--GCCACC- -5'
19110 3' -57.9 NC_004684.1 + 2937 0.67 0.609783
Target:  5'- cUCCGGUGCCGagcaccgaGGcCAUCGgcgcgcugcuguUGCgGGUGGc -3'
miRNA:   3'- -GGGCCACGGC--------CCaGUAGC------------AUG-CCACC- -5'
19110 3' -57.9 NC_004684.1 + 45606 0.67 0.609783
Target:  5'- gCUGGUGUagguCGGGUCAUCGggauccaucaUGCGGgccaugacgUGGg -3'
miRNA:   3'- gGGCCACG----GCCCAGUAGC----------AUGCC---------ACC- -5'
19110 3' -57.9 NC_004684.1 + 31889 0.68 0.589047
Target:  5'- gCUGGUggacGCCGGGaCGUUGUucGCGGUcGGc -3'
miRNA:   3'- gGGCCA----CGGCCCaGUAGCA--UGCCA-CC- -5'
19110 3' -57.9 NC_004684.1 + 24509 0.68 0.589047
Target:  5'- uCUCGGUGCCaGaGGcCGggCGUGCGGcGGc -3'
miRNA:   3'- -GGGCCACGG-C-CCaGUa-GCAUGCCaCC- -5'
19110 3' -57.9 NC_004684.1 + 36925 0.68 0.578723
Target:  5'- gCCCGGUcgagGCCGGGUgGacaCGccUGCuGGUGGu -3'
miRNA:   3'- -GGGCCA----CGGCCCAgUa--GC--AUG-CCACC- -5'
19110 3' -57.9 NC_004684.1 + 39108 0.68 0.548016
Target:  5'- aCCCGGUGaCCGGGUacgccUGcGCGG-GGu -3'
miRNA:   3'- -GGGCCAC-GGCCCAgua--GCaUGCCaCC- -5'
19110 3' -57.9 NC_004684.1 + 168 0.69 0.52783
Target:  5'- aCCGGUGaCCGGGUUgGUCGggACcaccaccaaGGUGGc -3'
miRNA:   3'- gGGCCAC-GGCCCAG-UAGCa-UG---------CCACC- -5'
19110 3' -57.9 NC_004684.1 + 53014 0.69 0.516846
Target:  5'- gCCCGGUGUCGGucagccaGUCggCGUacaccugcGCGGUGc -3'
miRNA:   3'- -GGGCCACGGCC-------CAGuaGCA--------UGCCACc -5'
19110 3' -57.9 NC_004684.1 + 36776 0.69 0.498094
Target:  5'- gCCCGGUGCCGacgcuGGUCGgcggCGgcuCGGUc- -3'
miRNA:   3'- -GGGCCACGGC-----CCAGUa---GCau-GCCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.