miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19110 5' -56.5 NC_004684.1 + 14466 0.66 0.712044
Target:  5'- gCGCCUgCCUGgAauGCGGCCACGccGCCGu -3'
miRNA:   3'- -GCGGA-GGGCgUgcUGUUGGUGU--UGGU- -5'
19110 5' -56.5 NC_004684.1 + 61989 0.66 0.710996
Target:  5'- aGCCaCCCGCacccgccGCGcACAAUCGCGACgGg -3'
miRNA:   3'- gCGGaGGGCG-------UGC-UGUUGGUGUUGgU- -5'
19110 5' -56.5 NC_004684.1 + 41362 0.66 0.710996
Target:  5'- cCGCCuugcuuggugaagUCCgGCACGuugaaccCGGCCGCcGCCAg -3'
miRNA:   3'- -GCGG-------------AGGgCGUGCu------GUUGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 10456 0.66 0.701529
Target:  5'- gGCCUCCagaaguGCugGAUcGCCACuAUCGa -3'
miRNA:   3'- gCGGAGGg-----CGugCUGuUGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 41687 0.66 0.701529
Target:  5'- gGCaacaCCCaGCGCGGCGACgGCGugCGg -3'
miRNA:   3'- gCGga--GGG-CGUGCUGUUGgUGUugGU- -5'
19110 5' -56.5 NC_004684.1 + 16696 0.66 0.701529
Target:  5'- gGCCUgCCGCcugGCGugGugUACGGCa- -3'
miRNA:   3'- gCGGAgGGCG---UGCugUugGUGUUGgu -5'
19110 5' -56.5 NC_004684.1 + 57104 0.66 0.701529
Target:  5'- gCGaCCUCUgGCGCGACAcCgGCGucgcugGCCAg -3'
miRNA:   3'- -GC-GGAGGgCGUGCUGUuGgUGU------UGGU- -5'
19110 5' -56.5 NC_004684.1 + 4304 0.66 0.701529
Target:  5'- uCGCCguaauguagugCuuGCACGGCGgcacgguaGCCGCcACCAa -3'
miRNA:   3'- -GCGGa----------GggCGUGCUGU--------UGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 59339 0.66 0.700473
Target:  5'- aGCCgcaCCCugcuggcGCugGAgGACCGcCAGCCGa -3'
miRNA:   3'- gCGGa--GGG-------CGugCUgUUGGU-GUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 65590 0.66 0.698361
Target:  5'- gGCCUCggucaugagCCGCACGGCGGCguccugguuggcguC-CAGCCAc -3'
miRNA:   3'- gCGGAG---------GGCGUGCUGUUG--------------GuGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 65287 0.66 0.695187
Target:  5'- aCGgUUCCCcagaaCGCGACGgcggccucgcugugcACCACGGCCAg -3'
miRNA:   3'- -GCgGAGGGc----GUGCUGU---------------UGGUGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 22024 0.66 0.690948
Target:  5'- uCGCCgaCCUGaacCGCGACAugCggaACAGCCAg -3'
miRNA:   3'- -GCGGa-GGGC---GUGCUGUugG---UGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 6907 0.66 0.690948
Target:  5'- uGCg-CCUGCGCGACAucCCGCucuACCu -3'
miRNA:   3'- gCGgaGGGCGUGCUGUu-GGUGu--UGGu -5'
19110 5' -56.5 NC_004684.1 + 23970 0.66 0.690948
Target:  5'- gGCCUCgCCGgGCcucggguucGGCGGCgGCGACCc -3'
miRNA:   3'- gCGGAG-GGCgUG---------CUGUUGgUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 47159 0.66 0.690948
Target:  5'- uGCCcaggagCaCCGUAgCGGCGGCCAgGGCCGc -3'
miRNA:   3'- gCGGa-----G-GGCGU-GCUGUUGGUgUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 21319 0.66 0.680313
Target:  5'- gGCgguggUCCgGCGCGACcGCCGCAuCCGu -3'
miRNA:   3'- gCGg----AGGgCGUGCUGuUGGUGUuGGU- -5'
19110 5' -56.5 NC_004684.1 + 52453 0.66 0.680313
Target:  5'- cCGCCaccgggaugCCCG-ACGGCAugGCCGCcACCAc -3'
miRNA:   3'- -GCGGa--------GGGCgUGCUGU--UGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 38407 0.66 0.680313
Target:  5'- gGCCUCCCGguCGcGCAGgCuCAGCUc -3'
miRNA:   3'- gCGGAGGGCguGC-UGUUgGuGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 22580 0.66 0.680313
Target:  5'- uCGCCcaCCCGgACuACAACUACGACgCAc -3'
miRNA:   3'- -GCGGa-GGGCgUGcUGUUGGUGUUG-GU- -5'
19110 5' -56.5 NC_004684.1 + 47388 0.66 0.680313
Target:  5'- gGCCUCCgGUGCGGuCAcaggACCACcgguGCCu -3'
miRNA:   3'- gCGGAGGgCGUGCU-GU----UGGUGu---UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.