miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19111 3' -59.8 NC_004684.1 + 638 0.66 0.568414
Target:  5'- aCGaGCACGgcgaccccaaGGaCACCGACgcgcacgacAGCGUGCGc -3'
miRNA:   3'- -GCgCGUGCa---------CC-GUGGCUG---------UCGCACGC- -5'
19111 3' -59.8 NC_004684.1 + 22927 0.66 0.568414
Target:  5'- aCGCGCACGcaGGUGgC--CAGCGUGCu -3'
miRNA:   3'- -GCGCGUGCa-CCGUgGcuGUCGCACGc -5'
19111 3' -59.8 NC_004684.1 + 51565 0.66 0.568414
Target:  5'- uGCGC-CaGUGcGCGCUGcGCGGCG-GCGa -3'
miRNA:   3'- gCGCGuG-CAC-CGUGGC-UGUCGCaCGC- -5'
19111 3' -59.8 NC_004684.1 + 7708 0.66 0.568414
Target:  5'- cCGuCGC-CGUGGCGCUGGCcGUGaGCc -3'
miRNA:   3'- -GC-GCGuGCACCGUGGCUGuCGCaCGc -5'
19111 3' -59.8 NC_004684.1 + 58940 0.66 0.562219
Target:  5'- gCGCGCAcCGgggagucagguucccUGGC-CCGGCGgGCGcGCGg -3'
miRNA:   3'- -GCGCGU-GC---------------ACCGuGGCUGU-CGCaCGC- -5'
19111 3' -59.8 NC_004684.1 + 42892 0.66 0.558099
Target:  5'- aCGCGCGgcccUGcGGCACCGcccCGGCGguaGCGc -3'
miRNA:   3'- -GCGCGU----GCaCCGUGGCu--GUCGCa--CGC- -5'
19111 3' -59.8 NC_004684.1 + 29757 0.66 0.558099
Target:  5'- gGCGgcCAUGgccaGcGCACCGACGGCGUuCGg -3'
miRNA:   3'- gCGC--GUGCa---C-CGUGGCUGUCGCAcGC- -5'
19111 3' -59.8 NC_004684.1 + 63364 0.66 0.558099
Target:  5'- aGCGCACcgagcGGCcgacgcgccaGCCGAUGGCG-GCGu -3'
miRNA:   3'- gCGCGUGca---CCG----------UGGCUGUCGCaCGC- -5'
19111 3' -59.8 NC_004684.1 + 56475 0.66 0.558099
Target:  5'- cCGuCGCugGUGGguuCACCGAcCAGCGcgaucaccGCGu -3'
miRNA:   3'- -GC-GCGugCACC---GUGGCU-GUCGCa-------CGC- -5'
19111 3' -59.8 NC_004684.1 + 50339 0.66 0.557071
Target:  5'- gGCGgGCGgccuccuUGGCAUCGGCAucgGCG-GCGu -3'
miRNA:   3'- gCGCgUGC-------ACCGUGGCUGU---CGCaCGC- -5'
19111 3' -59.8 NC_004684.1 + 10599 0.66 0.555015
Target:  5'- gGCGCGCGaGGUgcgcaacugccguuGCCGuaugGGCGUGCu -3'
miRNA:   3'- gCGCGUGCaCCG--------------UGGCug--UCGCACGc -5'
19111 3' -59.8 NC_004684.1 + 33074 0.66 0.551936
Target:  5'- uGCGCugcucaaucuguccgGCGUGGCgcuGCCGACgcaGGCGcucGCGc -3'
miRNA:   3'- gCGCG---------------UGCACCG---UGGCUG---UCGCa--CGC- -5'
19111 3' -59.8 NC_004684.1 + 57524 0.66 0.551936
Target:  5'- uGCGCgGCGUcGGgauccggcggcagcuCACCGGCGGCG-GUGa -3'
miRNA:   3'- gCGCG-UGCA-CC---------------GUGGCUGUCGCaCGC- -5'
19111 3' -59.8 NC_004684.1 + 16274 0.66 0.547838
Target:  5'- uCGCGC-CG-GGC-CCGAC-GCG-GCGc -3'
miRNA:   3'- -GCGCGuGCaCCGuGGCUGuCGCaCGC- -5'
19111 3' -59.8 NC_004684.1 + 52240 0.66 0.547838
Target:  5'- --gGC-CGUGGUGCC-ACAGCG-GCGg -3'
miRNA:   3'- gcgCGuGCACCGUGGcUGUCGCaCGC- -5'
19111 3' -59.8 NC_004684.1 + 28280 0.66 0.547838
Target:  5'- cCGCGCagGCGUacccGGuCACCGGguGCGUagGCa -3'
miRNA:   3'- -GCGCG--UGCA----CC-GUGGCUguCGCA--CGc -5'
19111 3' -59.8 NC_004684.1 + 28088 0.66 0.547838
Target:  5'- cCGcCGCGCGacccGCACCGGguG-GUGCGg -3'
miRNA:   3'- -GC-GCGUGCac--CGUGGCUguCgCACGC- -5'
19111 3' -59.8 NC_004684.1 + 43487 0.66 0.547838
Target:  5'- gGUGCgGCG-GGCGCagCGGCAGCagGUGCa -3'
miRNA:   3'- gCGCG-UGCaCCGUG--GCUGUCG--CACGc -5'
19111 3' -59.8 NC_004684.1 + 63537 0.66 0.547838
Target:  5'- uCGCGgGCGUGGCGCuCGGCcuccucGGcCGcUGCc -3'
miRNA:   3'- -GCGCgUGCACCGUG-GCUG------UC-GC-ACGc -5'
19111 3' -59.8 NC_004684.1 + 57041 0.66 0.546815
Target:  5'- uCGCGCAUGUccuccccGGCGgggUCGAUGGCGgccUGCGu -3'
miRNA:   3'- -GCGCGUGCA-------CCGU---GGCUGUCGC---ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.