Results 1 - 20 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19111 | 3' | -59.8 | NC_004684.1 | + | 50339 | 0.66 | 0.557071 |
Target: 5'- gGCGgGCGgccuccuUGGCAUCGGCAucgGCG-GCGu -3' miRNA: 3'- gCGCgUGC-------ACCGUGGCUGU---CGCaCGC- -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 51565 | 0.66 | 0.568414 |
Target: 5'- uGCGC-CaGUGcGCGCUGcGCGGCG-GCGa -3' miRNA: 3'- gCGCGuG-CAC-CGUGGC-UGUCGCaCGC- -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 43487 | 0.66 | 0.547838 |
Target: 5'- gGUGCgGCG-GGCGCagCGGCAGCagGUGCa -3' miRNA: 3'- gCGCG-UGCaCCGUG--GCUGUCG--CACGc -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 638 | 0.66 | 0.568414 |
Target: 5'- aCGaGCACGgcgaccccaaGGaCACCGACgcgcacgacAGCGUGCGc -3' miRNA: 3'- -GCgCGUGCa---------CC-GUGGCUG---------UCGCACGC- -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 16274 | 0.66 | 0.547838 |
Target: 5'- uCGCGC-CG-GGC-CCGAC-GCG-GCGc -3' miRNA: 3'- -GCGCGuGCaCCGuGGCUGuCGCaCGC- -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 28088 | 0.66 | 0.547838 |
Target: 5'- cCGcCGCGCGacccGCACCGGguG-GUGCGg -3' miRNA: 3'- -GC-GCGUGCac--CGUGGCUguCgCACGC- -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 10599 | 0.66 | 0.555015 |
Target: 5'- gGCGCGCGaGGUgcgcaacugccguuGCCGuaugGGCGUGCu -3' miRNA: 3'- gCGCGUGCaCCG--------------UGGCug--UCGCACGc -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 22927 | 0.66 | 0.568414 |
Target: 5'- aCGCGCACGcaGGUGgC--CAGCGUGCu -3' miRNA: 3'- -GCGCGUGCa-CCGUgGcuGUCGCACGc -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 44479 | 0.66 | 0.537637 |
Target: 5'- gCGUGCGCGUGGacCACCggGACAGguuguaCGUGUc -3' miRNA: 3'- -GCGCGUGCACC--GUGG--CUGUC------GCACGc -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 7056 | 0.66 | 0.537637 |
Target: 5'- aCGCGCugGcggUGuGCAUgaUGACAGCGcgGCa -3' miRNA: 3'- -GCGCGugC---AC-CGUG--GCUGUCGCa-CGc -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 7708 | 0.66 | 0.568414 |
Target: 5'- cCGuCGC-CGUGGCGCUGGCcGUGaGCc -3' miRNA: 3'- -GC-GCGuGCACCGUGGCUGuCGCaCGc -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 52240 | 0.66 | 0.547838 |
Target: 5'- --gGC-CGUGGUGCC-ACAGCG-GCGg -3' miRNA: 3'- gcgCGuGCACCGUGGcUGUCGCaCGC- -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 33074 | 0.66 | 0.551936 |
Target: 5'- uGCGCugcucaaucuguccgGCGUGGCgcuGCCGACgcaGGCGcucGCGc -3' miRNA: 3'- gCGCG---------------UGCACCG---UGGCUG---UCGCa--CGC- -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 15765 | 0.66 | 0.51744 |
Target: 5'- uGCGCA-GcGGCACCuaucGCGGCG-GCGa -3' miRNA: 3'- gCGCGUgCaCCGUGGc---UGUCGCaCGC- -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 53797 | 0.66 | 0.526493 |
Target: 5'- gGCGCugGgaucgGGUugCGccuccauGCgGGCGUGCGc -3' miRNA: 3'- gCGCGugCa----CCGugGC-------UG-UCGCACGC- -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 63537 | 0.66 | 0.547838 |
Target: 5'- uCGCGgGCGUGGCGCuCGGCcuccucGGcCGcUGCc -3' miRNA: 3'- -GCGCgUGCACCGUG-GCUG------UC-GC-ACGc -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 60927 | 0.66 | 0.527502 |
Target: 5'- gCGuCGCACGccucGGCcaguUCGACAuGCGUGCu -3' miRNA: 3'- -GC-GCGUGCa---CCGu---GGCUGU-CGCACGc -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 63364 | 0.66 | 0.558099 |
Target: 5'- aGCGCACcgagcGGCcgacgcgccaGCCGAUGGCG-GCGu -3' miRNA: 3'- gCGCGUGca---CCG----------UGGCUGUCGCaCGC- -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 1300 | 0.66 | 0.527502 |
Target: 5'- gCGCGaCGCGUGGC-CgGACAuGCGguuccacgGCu -3' miRNA: 3'- -GCGC-GUGCACCGuGgCUGU-CGCa-------CGc -5' |
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19111 | 3' | -59.8 | NC_004684.1 | + | 15529 | 0.66 | 0.537637 |
Target: 5'- gGCGCugGaGGCGCUGAUccGCGUugGUGg -3' miRNA: 3'- gCGCGugCaCCGUGGCUGu-CGCA--CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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