miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19111 3' -59.8 NC_004684.1 + 15529 0.66 0.537637
Target:  5'- gGCGCugGaGGCGCUGAUccGCGUugGUGg -3'
miRNA:   3'- gCGCGugCaCCGUGGCUGu-CGCA--CGC- -5'
19111 3' -59.8 NC_004684.1 + 44479 0.66 0.537637
Target:  5'- gCGUGCGCGUGGacCACCggGACAGguuguaCGUGUc -3'
miRNA:   3'- -GCGCGUGCACC--GUGG--CUGUC------GCACGc -5'
19111 3' -59.8 NC_004684.1 + 7056 0.66 0.537637
Target:  5'- aCGCGCugGcggUGuGCAUgaUGACAGCGcgGCa -3'
miRNA:   3'- -GCGCGugC---AC-CGUG--GCUGUCGCa-CGc -5'
19111 3' -59.8 NC_004684.1 + 15836 0.66 0.537637
Target:  5'- gCGCGCAC-UGGCGCagagCGACAagGUGCu -3'
miRNA:   3'- -GCGCGUGcACCGUG----GCUGUcgCACGc -5'
19111 3' -59.8 NC_004684.1 + 60927 0.66 0.527502
Target:  5'- gCGuCGCACGccucGGCcaguUCGACAuGCGUGCu -3'
miRNA:   3'- -GC-GCGUGCa---CCGu---GGCUGU-CGCACGc -5'
19111 3' -59.8 NC_004684.1 + 49872 0.66 0.527502
Target:  5'- aCGuCGUccgGCGUGGCACCGcGCucGCGagcUGCGu -3'
miRNA:   3'- -GC-GCG---UGCACCGUGGC-UGu-CGC---ACGC- -5'
19111 3' -59.8 NC_004684.1 + 5934 0.66 0.527502
Target:  5'- gGUgGCACGcGaGCACCGGCGGCGagacaaUGCc -3'
miRNA:   3'- gCG-CGUGCaC-CGUGGCUGUCGC------ACGc -5'
19111 3' -59.8 NC_004684.1 + 1300 0.66 0.527502
Target:  5'- gCGCGaCGCGUGGC-CgGACAuGCGguuccacgGCu -3'
miRNA:   3'- -GCGC-GUGCACCGuGgCUGU-CGCa-------CGc -5'
19111 3' -59.8 NC_004684.1 + 53797 0.66 0.526493
Target:  5'- gGCGCugGgaucgGGUugCGccuccauGCgGGCGUGCGc -3'
miRNA:   3'- gCGCGugCa----CCGugGC-------UG-UCGCACGC- -5'
19111 3' -59.8 NC_004684.1 + 51776 0.66 0.51744
Target:  5'- uCGCGCGCGUugccuucgGGCACCcGGUAGCGcaccgaGCGc -3'
miRNA:   3'- -GCGCGUGCA--------CCGUGG-CUGUCGCa-----CGC- -5'
19111 3' -59.8 NC_004684.1 + 48680 0.66 0.51744
Target:  5'- aGCGagaGCGUGcCACCGGuCAGCGacUGCu -3'
miRNA:   3'- gCGCg--UGCACcGUGGCU-GUCGC--ACGc -5'
19111 3' -59.8 NC_004684.1 + 5244 0.66 0.51744
Target:  5'- uGCGCAaGgccgGGCACgGcgaGGCGUGCa -3'
miRNA:   3'- gCGCGUgCa---CCGUGgCug-UCGCACGc -5'
19111 3' -59.8 NC_004684.1 + 15765 0.66 0.51744
Target:  5'- uGCGCA-GcGGCACCuaucGCGGCG-GCGa -3'
miRNA:   3'- gCGCGUgCaCCGUGGc---UGUCGCaCGC- -5'
19111 3' -59.8 NC_004684.1 + 1576 0.66 0.51744
Target:  5'- gGUGCGCcUGucuGCGCUGAgcgcCAGCGUGCa -3'
miRNA:   3'- gCGCGUGcAC---CGUGGCU----GUCGCACGc -5'
19111 3' -59.8 NC_004684.1 + 18585 0.67 0.507455
Target:  5'- cCGCGCugGUGGCucuggaCGAuggcuuugaggcCAGCGacuggGCGa -3'
miRNA:   3'- -GCGCGugCACCGug----GCU------------GUCGCa----CGC- -5'
19111 3' -59.8 NC_004684.1 + 17184 0.67 0.507455
Target:  5'- uCG-GCACcUGGCacgacGCCGACGGCaacgucGUGCGg -3'
miRNA:   3'- -GCgCGUGcACCG-----UGGCUGUCG------CACGC- -5'
19111 3' -59.8 NC_004684.1 + 30228 0.67 0.507455
Target:  5'- gGCGCgACGUGGC-CCu-CGGCGcGCu -3'
miRNA:   3'- gCGCG-UGCACCGuGGcuGUCGCaCGc -5'
19111 3' -59.8 NC_004684.1 + 22211 0.67 0.507455
Target:  5'- gGCGCAgGUGGCcucccuGCgCGACGGCacccGCGc -3'
miRNA:   3'- gCGCGUgCACCG------UG-GCUGUCGca--CGC- -5'
19111 3' -59.8 NC_004684.1 + 41662 0.67 0.506461
Target:  5'- gGCGUACGaaggccgGGCcgaccucggcaacACCcagcgcggcGACGGCGUGCGg -3'
miRNA:   3'- gCGCGUGCa------CCG-------------UGG---------CUGUCGCACGC- -5'
19111 3' -59.8 NC_004684.1 + 63694 0.67 0.497552
Target:  5'- aGCGCG-GcGGCGCUGGCgaucuccugccAGCGUGCc -3'
miRNA:   3'- gCGCGUgCaCCGUGGCUG-----------UCGCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.