miRNA display CGI


Results 1 - 20 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19111 5' -57.8 NC_004684.1 + 17266 0.66 0.645049
Target:  5'- cCCGCcgaucaaccugGCCAUCgagguggggGCCAGcCGCC-UGGUCg -3'
miRNA:   3'- aGGCG-----------UGGUAG---------UGGUC-GUGGuGCCAG- -5'
19111 5' -57.8 NC_004684.1 + 65749 0.66 0.645049
Target:  5'- gCCcCACUugggCGCCGGUACC-CGGUUg -3'
miRNA:   3'- aGGcGUGGua--GUGGUCGUGGuGCCAG- -5'
19111 5' -57.8 NC_004684.1 + 20800 0.66 0.643978
Target:  5'- aCCGcCGCCGUCGCCgccgucgAGCGCgACuGGg- -3'
miRNA:   3'- aGGC-GUGGUAGUGG-------UCGUGgUG-CCag -5'
19111 5' -57.8 NC_004684.1 + 24515 0.66 0.643978
Target:  5'- gCCGCGCguUCGgCGGUGCCaucuacgGCGGUg -3'
miRNA:   3'- aGGCGUGguAGUgGUCGUGG-------UGCCAg -5'
19111 5' -57.8 NC_004684.1 + 22543 0.66 0.634328
Target:  5'- cUCUGC-CCGguguguUCGCCGGUaucGCCAcauCGGUCg -3'
miRNA:   3'- -AGGCGuGGU------AGUGGUCG---UGGU---GCCAG- -5'
19111 5' -57.8 NC_004684.1 + 55791 0.66 0.634328
Target:  5'- cUCgGUGCCGUCGuCCAggcGCACCgGCGGg- -3'
miRNA:   3'- -AGgCGUGGUAGU-GGU---CGUGG-UGCCag -5'
19111 5' -57.8 NC_004684.1 + 54481 0.66 0.634328
Target:  5'- gCCGaCGgCG-CACCGGCACCGCuGG-Cg -3'
miRNA:   3'- aGGC-GUgGUaGUGGUCGUGGUG-CCaG- -5'
19111 5' -57.8 NC_004684.1 + 46024 0.66 0.634328
Target:  5'- aUCGCACgaUAUCACCGccguGCGacaCAUGGUCa -3'
miRNA:   3'- aGGCGUG--GUAGUGGU----CGUg--GUGCCAG- -5'
19111 5' -57.8 NC_004684.1 + 23956 0.66 0.634328
Target:  5'- gCCGCACCGaccucggccUCGCCGG-GCCuCGGg- -3'
miRNA:   3'- aGGCGUGGU---------AGUGGUCgUGGuGCCag -5'
19111 5' -57.8 NC_004684.1 + 1759 0.66 0.634328
Target:  5'- nCCGCACCugCAUCAGU-CCAUGGa- -3'
miRNA:   3'- aGGCGUGGuaGUGGUCGuGGUGCCag -5'
19111 5' -57.8 NC_004684.1 + 1619 0.66 0.623604
Target:  5'- uUCCgGCACCugCACCGGCGCaacCGGg- -3'
miRNA:   3'- -AGG-CGUGGuaGUGGUCGUGgu-GCCag -5'
19111 5' -57.8 NC_004684.1 + 26408 0.66 0.623604
Target:  5'- gCCGcCACCGgcgCGCUGGCAgCGgGGUUc -3'
miRNA:   3'- aGGC-GUGGUa--GUGGUCGUgGUgCCAG- -5'
19111 5' -57.8 NC_004684.1 + 1269 0.66 0.623604
Target:  5'- aCCgGCgACCAcuUCGCCAGCACgCGuCGcGUCc -3'
miRNA:   3'- aGG-CG-UGGU--AGUGGUCGUG-GU-GC-CAG- -5'
19111 5' -57.8 NC_004684.1 + 17709 0.66 0.623604
Target:  5'- cUCCGCGCCAcCAagaUCAacaACUGCGGUCg -3'
miRNA:   3'- -AGGCGUGGUaGU---GGUcg-UGGUGCCAG- -5'
19111 5' -57.8 NC_004684.1 + 60561 0.66 0.623604
Target:  5'- cUUCGCGCCGUagGCCAGCuccuccagGCCgACGG-Cg -3'
miRNA:   3'- -AGGCGUGGUAg-UGGUCG--------UGG-UGCCaG- -5'
19111 5' -57.8 NC_004684.1 + 14394 0.66 0.612887
Target:  5'- aCCGgGCCGUCGCCGcaggagauGCugCGCGa-- -3'
miRNA:   3'- aGGCgUGGUAGUGGU--------CGugGUGCcag -5'
19111 5' -57.8 NC_004684.1 + 52637 0.66 0.612887
Target:  5'- -aCGuCGCCAUCACCGGCAugcuugcgcucCCA-GGUg -3'
miRNA:   3'- agGC-GUGGUAGUGGUCGU-----------GGUgCCAg -5'
19111 5' -57.8 NC_004684.1 + 56499 0.66 0.612887
Target:  5'- -aCGCGCCgacccgggugGUCACCGGCGUCGgugaGGUCg -3'
miRNA:   3'- agGCGUGG----------UAGUGGUCGUGGUg---CCAG- -5'
19111 5' -57.8 NC_004684.1 + 54555 0.66 0.612887
Target:  5'- cUCCGCgACCAcgUCGgCAGCagaGCCGCcGUCc -3'
miRNA:   3'- -AGGCG-UGGU--AGUgGUCG---UGGUGcCAG- -5'
19111 5' -57.8 NC_004684.1 + 16812 0.66 0.612887
Target:  5'- -gCGCGCCAUucgCGCCAGguUCAaagcgGGUCg -3'
miRNA:   3'- agGCGUGGUA---GUGGUCguGGUg----CCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.